Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08r
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41871| Best HMM Match : YabP (HMM E-Value=0.95)                     29   4.3  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_18240| Best HMM Match : Ank (HMM E-Value=7.8e-08)                   28   7.6  

>SB_41871| Best HMM Match : YabP (HMM E-Value=0.95)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 483 LSLFETPKVKANLRAI-SYIFPNKNLGNFF*QLLRPLSSLNS 605
           L+  E   ++A LR I  YIF N+N   FF +L   L  +++
Sbjct: 50  LTYAENQSLRAKLRGILQYIFKNQNFAGFFTELRAKLHGIST 91


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 141 FRLPLLFLP*TKHHFFMLS*KTLTF 67
           FR+P+ ++P +K HFFM S   +TF
Sbjct: 359 FRIPVAWIPDSKSHFFMDSRFRITF 383


>SB_18240| Best HMM Match : Ank (HMM E-Value=7.8e-08)
          Length = 185

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +3

Query: 96  KNDALSMVRIIMANGNDL*INLLTYT*STMYNNMSFSKIVNSKKNVYFQNTLKFQSCV 269
           KND++ M+R+++ NG D+   LL    +   +N+ + K + + +N   + + +  SCV
Sbjct: 96  KNDSIEMIRLLLKNGADVGAALLQ---AVSKDNVLYVKALLAYENNNDRFSRRSSSCV 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,618,866
Number of Sequences: 59808
Number of extensions: 376087
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)