Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08r
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    29   3.8  
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    28   5.0  
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    28   5.0  

>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = -2

Query: 253 FKVF*KYTFFLLFTIFENDILLYIVDYV*VSKLIYRSFPFAIIILTIDKASFFYALIENI 74
           F V  KY FF+ F +F     +    Y  VS   Y    F +++L ++ A         +
Sbjct: 80  FVVVAKYIFFISFQVFAVLPNMSETIYSYVSLFAYE---FCLLLLRVNNAV--------L 128

Query: 73  DFFCIFPPFVMYSLSLFMFLTKPV 2
           DFF I  P V + +  F    KP+
Sbjct: 129 DFFLIISPIVRFLVYFFPSTEKPI 152


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical protein
            C29E6.2 protein.
          Length = 1193

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 190  LYIVDYV*VSKLIYRSFPFAIIILTIDKASFFYALIENIDFFCIF 56
            +++V +V + K  +R FP  ++ +    +SF+  L    +F  IF
Sbjct: 943  IFVVMFVDIVKTFFRFFPVFVLFIIAFSSSFYVILQNRPEFSTIF 987


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient receptor
            potential subfamilyA-1 protein.
          Length = 1206

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 190  LYIVDYV*VSKLIYRSFPFAIIILTIDKASFFYALIENIDFFCIF 56
            +++V +V + K  +R FP  ++ +    +SF+  L    +F  IF
Sbjct: 956  IFVVMFVDIVKTFFRFFPVFVLFIIAFSSSFYVILQNRPEFSTIF 1000


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,740,363
Number of Sequences: 27780
Number of extensions: 321523
Number of successful extensions: 800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)