Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08r
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 242 LKIYILFTVYYFRK*HIIIHCRLRVS 165
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLN 191


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 242 LKIYILFTVYYFRK*HIIIHCRLRVS 165
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLN 191


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 242 LKIYILFTVYYFRK*HIIIHCRLRVS 165
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 217 LRIYRNGTVNYLMRRHLILSCQGRLN 242


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 242 LKIYILFTVYYFRK*HIIIHCRLRVS 165
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLN 191


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 313 CPGNFLRDQEKSIIVKFTKRFAN*LTYYTYIL 408
           CPG   R  + +   K ++RFA+   Y  Y L
Sbjct: 409 CPGRVRRRYQPAFRCKPSQRFASGRYYSAYSL 440


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 480 FLSLFETPKVKANLRAISYI 539
           FL   +TP V+A+ R +SY+
Sbjct: 678 FLKHNDTPVVRASGRELSYV 697


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,744
Number of Sequences: 438
Number of extensions: 4005
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)