Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    31   0.100
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    31   0.17 
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    29   0.53 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   2.1  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.1  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   5.0  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   8.7  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    25   8.7  

>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 31.5 bits (68), Expect = 0.100
 Identities = 27/101 (26%), Positives = 46/101 (45%)
 Frame = +1

Query: 115 NLNEEKNPDAEIVASGVIVGYLIYTLVQIVTFLFGTTEHKRALSEIVMNFVGVFLWIAVG 294
           NL   K+  ++++A   ++GYL YT   +   L G   ++  +S   M FVG+ ++ A+G
Sbjct: 124 NLRFRKS-GSKMLAGHYLLGYLFYTHTFLALLLCGRRSYENTMSS--MQFVGLGIY-AIG 179

Query: 295 AVALHYWGGYQGEHQFQFVFAEKQVGLAVGALCVINGAIYL 417
           ++    W     EH        + + L  G    I G  YL
Sbjct: 180 SI----WQNASHEHLIAQKNHSQYLVLKKGCFKWITGPHYL 216


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -3

Query: 227 SVVPNKNVTICTSV*MR*PTITPEATISASGFFSSFRFQVPPTPRNS 87
           S+VP+KN T  +S  M    +TP +  S S  +S +R   PP P++S
Sbjct: 671 SLVPSKNNTASSSSLMLDSPVTPSSPYSTSQGYSFYR---PPKPKSS 714


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 3   DYSDYSREDIQNCLEHYNLSALP 71
           DY+ Y R   Q  LEH+  SALP
Sbjct: 274 DYNPYRRPTAQQALEHHYFSALP 296


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 268  GVFLWIAVGAVALHYWGGYQGEHQFQFVFAEKQVGLAVGALCVINGAIYLLDTALS 435
            G  L + + A     +G ++G HQ   V   +    + G  C+I G  Y+L  + S
Sbjct: 915  GAVLVVDILATLFCIFGWFKGGHQTSIVAVIRIWMYSFGIFCLIAGVYYILSESSS 970


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +1

Query: 178 LIYTLVQIVTFLFGTTEHKRALSEIVMNFVGVFLWIAVGAVALHYWGGY 324
           ++Y L++    +F    H  +L    + ++G+ + + +GA  + Y+ GY
Sbjct: 343 ILYLLLEAYPIIFAEKRHF-SLGVDALPYIGLLVGVILGAALIAYFQGY 390


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 268 GVFLWIAVGAVALHYWGGYQGEHQFQFVFAEKQVGLAVGALCVINGAIYLL 420
           G  L + + A     +G ++G HQ   V   +    + G  C++ G  Y+L
Sbjct: 827 GAVLAVDILATMFCIFGWFKGGHQTSIVAVLRIWMYSFGIFCIMAGTYYIL 877


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 352 RQTGTGARPGILPSSVMPQRPPQSIGTLRRSSSRSQT 242
           R T + A+P  L  SV   +PP+   +L RS +R ++
Sbjct: 43  RSTSSKAQPFRLDDSVYSDQPPKDHISLARSITRPES 79


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 294 AHRNP*EHSDEVHHDLRQSAFVL 226
           AHRNP + SDE   D  QS  +L
Sbjct: 402 AHRNPYKSSDETILDSLQSVHIL 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,679
Number of Sequences: 5004
Number of extensions: 51859
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)