Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08f
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    31   0.71 
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255     31   0.94 
10_02_0156 + 5946160-5946423,5946558-5947063,5947430-5947486,594...    30   1.6  
09_04_0356 - 16925821-16925969,16926056-16926165,16926261-169263...    29   3.8  
09_02_0059 - 3716345-3716674                                           28   6.7  
03_01_0180 + 1456182-1456359,1456444-1456520,1456570-1456692,145...    28   6.7  

>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +1

Query: 136 PDAEIVASGVIVGYLIYTLVQIVTFLFGTTEHKRALSEIVMNFVGVF--LWI---AVGAV 300
           P++E +  G ++  L  T   +    FG +    A    ++   G +   W+   A   +
Sbjct: 259 PESETMQKGNVIAVLATTFFYLCVGCFGYSAFGNAAPGNLLTGFGFYEPYWLIDFANACI 318

Query: 301 ALHYWGGYQGEHQFQFVFAEK 363
            LH  GGYQ   Q  F FA++
Sbjct: 319 VLHLLGGYQMFSQQIFTFADR 339


>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
          Length = 965

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 18  SREDIQNCLEHYNLSALPHRLQWRVPGGRRNLEPERGEES*RGDRCLRSNRGLPHLY 188
           S +D + C E +  +  P  L+ RV    R   PE       GDR L+  +  P L+
Sbjct: 727 SLDDTRRCQEDHQFTDSPWNLELRVRNNARKRRPEPQPLDGAGDRRLKPRKDSPPLH 783


>10_02_0156 +
           5946160-5946423,5946558-5947063,5947430-5947486,
           5947664-5947902,5948200-5948318,5948400-5948486,
           5951757-5951816
          Length = 443

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
 Frame = +1

Query: 151 VASGVIVGYLIYTLVQIVTFLFGTTEHKRALSEIVM--NFVGV--FLWIAVGAVALHYWG 318
           +A  ++VG L+  +VQ+++ +F     + ALS   M  +F GV  F  +A GA   H  G
Sbjct: 40  LAGPLVVGMLLQNVVQMISVMFVGHLGELALSSASMATSFAGVTGFSLLAFGAKQHHMLG 99

Query: 319 GYQGEHQFQFVFAEKQVGLAVGALCVINGAIYLL 420
            Y  + +   V A   V + + A+    G I L+
Sbjct: 100 VY--KQRAMLVLA--LVSVPIAAVWAFTGEILLV 129


>09_04_0356 -
           16925821-16925969,16926056-16926165,16926261-16926386,
           16926485-16926572,16926648-16926768,16926902-16926974,
           16927395-16927458,16928019-16928062,16928160-16928218,
           16928771-16928870,16929043-16929146
          Length = 345

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 165 NRGLPHLYASADRHILVWYHGAQTRFV*DRDELRRSVPMDC 287
           NR + H YA+ D  +  W+ G     + DRD +    P DC
Sbjct: 259 NRPILHKYANEDVSLGAWFIGLDVEHIDDRD-MCCGTPPDC 298


>09_02_0059 - 3716345-3716674
          Length = 109

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 434 ESAVSNKYMAPFMTHRAPTARPTCFSAKT 348
           E  V+  ++ P +T   PT +PT F+A T
Sbjct: 4   EGRVNRHHLPPLVTAAGPTLQPTTFTAAT 32


>03_01_0180 +
           1456182-1456359,1456444-1456520,1456570-1456692,
           1456783-1456896,1457580-1457666,1458040-1458179,
           1458253-1458340,1459125-1459198,1461147-1461340,
           1461430-1461632,1461955-1462001,1462084-1462336,
           1462551-1462568
          Length = 531

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 328 PGILPSSVMPQRPPQSIGTLRRSSSRSQTKR 236
           PG LP+ + P+R P S    R S + +Q  R
Sbjct: 499 PGTLPTIISPERSPASQAPSRSSPNSTQVSR 529


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,278
Number of Sequences: 37544
Number of extensions: 341443
Number of successful extensions: 1041
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)