Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a08f
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 31 0.73
SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22) 30 1.7
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 2.9
SB_2589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 29 3.9
SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 5.1
SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1) 28 5.1
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
Length = 821
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 9 SDYSREDIQNCLEHYNLSALPHRLQWRVPGGRRNLEPERGEES*RGDRCLRSNRGLPHL 185
S+YS ED + LS+ P +PG +E +RG E D C R + HL
Sbjct: 111 SEYSPEDSCGYAKSELLSSFPAGSDIPLPGSGEKMEMKRGVECASTDDCSGYKRSMTHL 169
>SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22)
Length = 374
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -1
Query: 385 LRRPGQPVSQRRQTGTGARPGILPSSVMPQRPPQSIGTLR---RSSSRSQTKRVCAPWYQ 215
L RP P++ GTGA P S PQ P+ + L+ R S R + C +Q
Sbjct: 298 LERPQPPITTNHSIGTGAHP---TPSASPQNSPRCLALLQWPPRQSFRKVDRSGCDNGHQ 354
Query: 214 TRM 206
++
Sbjct: 355 DKV 357
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 434 ESAVSNKYMAPFMTHRAPTARPTCFSAKTNWNWCSPWYPPQ*CNATAPTAIH 279
E+ V A M HRA ++ TC S + + P CNA++PT H
Sbjct: 25 ETCVPEPRFAAKMKHRAVSSTSTCGSPPSEYCRVKPLNGCFKCNASSPTERH 76
>SB_2589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -3
Query: 398 MTHRAPTARPTCFSAKTNWNWCSPW 324
+ HR PTA+ T W W W
Sbjct: 153 LAHRCPTAKDYLLQNSTRWQWAVQW 177
>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 968
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 151 VASGVIVGYLIYTLVQIVTFLFGTTEHKRALSEIVMNFVGVFLWIAVGAVALHYWG---G 321
+A + V YL+ TL+ I +R ++ V+ +V + +H W G
Sbjct: 800 LAGNLYVNYLVMTLLSIPHLPISWFLMQRCFDTTLLLKTQVWASDSVLRLHVHRWYFMLG 859
Query: 322 YQGEHQFQFVFAEKQVGLAVGALCVINGAI 411
Y G+ E+ +G+ VG++C GAI
Sbjct: 860 YNGD-------PERNIGMGVGSMCARVGAI 882
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 382 RRPGQPVSQRRQTGTGARPGILPSSVMPQRPPQSIGT 272
+RPG QR + G RPG S M QRP ++G+
Sbjct: 957 QRPGSAAGQRPGSAMGQRPG----SAMGQRPGSAMGS 989
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 379 RPGQPVSQRRQTGTGARPGILPSSVMPQRPPQSIG 275
RPG P + RQ G RPG+ +M Q+ +G
Sbjct: 150 RPGFPPAGSRQMAPGMRPGVPHQQMMMQQQAPGMG 184
>SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 431
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +1
Query: 79 YNGEFLGVGGTWNLNEEKNPDAEIVASGVIVGYLIYTLVQIVTFLFGTTEHKRALSEIVM 258
Y G F GG + L K A ++ + V L T++ +L KRALS +
Sbjct: 130 YKGVF--PGGDFGLAVCKL-QAYLLTVPISVSVLTMTVISFDRYLAIVHPLKRALSVKAV 186
Query: 259 NFVGVFLWIAVGAV 300
+V F+W+A GA+
Sbjct: 187 TWVVSFIWLASGAL 200
>SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 362 FSAKTNWNWCSPWYPPQ*CNATAPTAI 282
++ ++ W SPWYP CN T P I
Sbjct: 572 WTVQSKWTTWSPWYP---CNVTCPGRI 595
>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 473
Score = 28.3 bits (60), Expect = 5.1
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Frame = -3
Query: 392 HRAPTARPTCFSAKTNWNWCSPWYPPQ*CNATAPTAIHRNTPTKFITISDKARL--CSVV 219
+R A T + T+ ++ + P +TAPTAI ++ T+ L S+
Sbjct: 244 NRTREANSTMILSSTSVSYNTTLTPAPDATSTAPTAISPSSVGNMTTLVSSVNLTRSSLS 303
Query: 218 PNKNVTICTSV*MR*PTI--TPEATISASGFFSSFRFQVPPTPRNS 87
+I TS+ T+ TP+ T + SSF V P S
Sbjct: 304 TTLIPSISTSILSYNTTVIATPDTTRFVTSTISSFTLNVSANPTTS 349
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 153 NDLRVRILLLVQVPSSSDPQELSIVTGAVE 64
ND RV++L+ V+ SS+P+ +++ G VE
Sbjct: 654 NDGRVQLLIRVKAKDSSEPRFITVRPGPVE 683
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,580,874
Number of Sequences: 59808
Number of extensions: 402121
Number of successful extensions: 1087
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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