Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a08f
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 46  NIIILVLYRTGYNGEFLGVGGTW--NLNEEKNPDAEIVASGVIVGYLI 183
           NI+ L L  TG      GVG     NL +  NP+  IV SG+   Y++
Sbjct: 814 NILFLDL-STGKVEMITGVGKATSPNLTKWGNPNRPIVQSGIFGKYMV 860


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 121 NEEKNPDAEIVASGVIVGYLIY 186
           +E++ P A++ ASG  + +L+Y
Sbjct: 395 HEQQKPVADVAASGPGLAFLVY 416


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 291 HRNP*EHSDEVHHDLRQSAFVLRGTKQECDDLH 193
           +R P ++  +V H +R+ A +LR +  +  D++
Sbjct: 430 YRGPKQNKPKVLHAIRRGASILRVSMPKIKDVN 462


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +1

Query: 166 IVGYLIYTLVQI-VTFLFG 219
           +VGYL+Y+L Q+ +  +FG
Sbjct: 159 VVGYLLYSLGQVFMLCIFG 177


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 100 VGGTWNLNEEKNPDAEIV 153
           VGG W +N  K+   +IV
Sbjct: 7   VGGNWKMNGTKSEINDIV 24


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 388 ELRRPGQPVSQRRQTGTGARPGILPSSVMPQRPP 287
           ++  P  P S    TG+      L +++M Q PP
Sbjct: 349 QMASPEPPKSSESSTGSSIPKLNLSTALMSQPPP 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,026
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)