Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a08f
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22720.3 68415.m02692 expressed protein 29 2.4
At2g22720.2 68415.m02691 expressed protein 29 2.4
At2g22720.1 68415.m02693 expressed protein 29 2.4
At2g40290.2 68415.m04961 eukaryotic translation initiation facto... 29 3.2
At2g40290.1 68415.m04960 eukaryotic translation initiation facto... 29 3.2
At1g32930.1 68414.m04056 galactosyltransferase family protein co... 29 3.2
At3g29220.1 68416.m03665 hypothetical protein 28 5.6
At1g12730.2 68414.m01478 cell division cycle protein-related con... 28 5.6
At1g12730.1 68414.m01477 cell division cycle protein-related con... 28 5.6
At1g10340.2 68414.m01165 ankyrin repeat family protein contains ... 28 5.6
At1g10340.1 68414.m01164 ankyrin repeat family protein contains ... 28 5.6
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 27 7.4
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi... 27 9.7
At1g33430.1 68414.m04138 galactosyltransferase family protein co... 27 9.7
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 382 RRPGQPVSQRRQTGTGARPGILPSSVMPQRPPQSIGTLRRSSS 254
+RP SQR + RPG + P RPP S T+ S+
Sbjct: 311 QRPASSGSQRPASSGSQRPGSSTNRQAPMRPPGSGSTMNGQSA 353
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 382 RRPGQPVSQRRQTGTGARPGILPSSVMPQRPPQSIGTLRRSSS 254
+RP SQR + RPG + P RPP S T+ S+
Sbjct: 414 QRPASSGSQRPASSGSQRPGSSTNRQAPMRPPGSGSTMNGQSA 456
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 382 RRPGQPVSQRRQTGTGARPGILPSSVMPQRPPQSIGTLRRSSS 254
+RP SQR + RPG + P RPP S T+ S+
Sbjct: 82 QRPASSGSQRPASSGSQRPGSSTNRQAPMRPPGSGSTMNGQSA 124
>At2g40290.2 68415.m04961 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to Swiss-Prot:P05198 eukaryotic
translation initiation factor 2 subunit 1 (Eukaryotic
translation initiation factor 2 alpha subunit)
(eIF-2-alpha) (EIF- 2alpha) (EIF-2A) [Homo sapiens]
Length = 241
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 18 SREDIQNCLEHYNLSALPHRLQWRV 92
S EDIQ C E YN S L H + V
Sbjct: 95 SEEDIQTCEERYNKSKLVHSIMRHV 119
>At2g40290.1 68415.m04960 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to Swiss-Prot:P05198 eukaryotic
translation initiation factor 2 subunit 1 (Eukaryotic
translation initiation factor 2 alpha subunit)
(eIF-2-alpha) (EIF- 2alpha) (EIF-2A) [Homo sapiens]
Length = 344
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 18 SREDIQNCLEHYNLSALPHRLQWRV 92
S EDIQ C E YN S L H + V
Sbjct: 95 SEEDIQTCEERYNKSKLVHSIMRHV 119
>At1g32930.1 68414.m04056 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 399
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 165 NRGLPHLYASADRHILVWYHGAQTRFV*DRDELRRSVPMDC 287
NR L H YA+ D + W+ G + DR L P+DC
Sbjct: 313 NRQLLHKYANEDVSLGSWFIGLDVEHIDDR-SLCCGTPLDC 352
>At3g29220.1 68416.m03665 hypothetical protein
Length = 197
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 441 TFHKGNVILLYFFLINNIAKMPLFT*VTINVSLSTKIVLTNELSR 575
TFH GNVIL + + V ++ + ++V+ N LSR
Sbjct: 145 TFHPGNVILQQQYRAKGYTRYSDLMQVLLDTEQNNELVMVNHLSR 189
>At1g12730.2 68414.m01478 cell division cycle protein-related
contains 10 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 390
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 241 LSEIVMNFVGVFLWIAVGAVALHYWGGYQGEHQFQFVFAEKQV 369
LS ++ NF ++W G A Y+G G FQF+F EK V
Sbjct: 332 LSPVMHNF---WIWRGTGN-ANFYFGNAMGYACFQFMFVEKSV 370
>At1g12730.1 68414.m01477 cell division cycle protein-related
contains 10 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 474
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 241 LSEIVMNFVGVFLWIAVGAVALHYWGGYQGEHQFQFVFAEKQV 369
LS ++ NF ++W G A Y+G G FQF+F EK V
Sbjct: 416 LSPVMHNF---WIWRGTGN-ANFYFGNAMGYACFQFMFVEKSV 454
>At1g10340.2 68414.m01165 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 574
Score = 27.9 bits (59), Expect = 5.6
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Frame = +1
Query: 28 TFKIVLNIIILVLYRTGYNGEFLGV--GGTWNLNEEKNPDAEIVASGVIVGYLIYTLVQI 201
T IV +I V Y G N GV G W + ++T + I
Sbjct: 403 TIAIVAVLIASVAYAGGINPPG-GVYQDGPWRGKSLVGKTTAFKVFAICNNIALFTSLGI 461
Query: 202 VTFLFGTTEHKRALSEIVMNFVGVFLWIAVGAVALHY----WGGYQGEHQFQFVFAEKQV 369
V L +KR + ++ +W++VG +A Y W H Q++F V
Sbjct: 462 VILLVSIIPYKRKPLKRLLVATHRMMWVSVGFMATAYIAASWVTIPHYHGTQWLF-PAIV 520
Query: 370 GLAVGALCVI 399
+A GAL V+
Sbjct: 521 AVAGGALTVL 530
>At1g10340.1 68414.m01164 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 578
Score = 27.9 bits (59), Expect = 5.6
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Frame = +1
Query: 28 TFKIVLNIIILVLYRTGYNGEFLGV--GGTWNLNEEKNPDAEIVASGVIVGYLIYTLVQI 201
T IV +I V Y G N GV G W + ++T + I
Sbjct: 407 TIAIVAVLIASVAYAGGINPPG-GVYQDGPWRGKSLVGKTTAFKVFAICNNIALFTSLGI 465
Query: 202 VTFLFGTTEHKRALSEIVMNFVGVFLWIAVGAVALHY----WGGYQGEHQFQFVFAEKQV 369
V L +KR + ++ +W++VG +A Y W H Q++F V
Sbjct: 466 VILLVSIIPYKRKPLKRLLVATHRMMWVSVGFMATAYIAASWVTIPHYHGTQWLF-PAIV 524
Query: 370 GLAVGALCVI 399
+A GAL V+
Sbjct: 525 AVAGGALTVL 534
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 140 SGFFSSFRFQVPPTPRNSPL 81
SG +S++ +PPTP N P+
Sbjct: 48 SGDYSNYTVHIPPTPDNQPM 67
>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 738
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 222 HGAQTRFV*DRDELRRSVPMDCGGRCGITLLGRI 323
HG T++ DRD+ S +D G+CG + + R+
Sbjct: 391 HGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARL 424
>At1g33430.1 68414.m04138 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 395
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 156 LRSNRGLPHLYASADRHILVWYHGAQTRFV*DRDELRRSVPMDC 287
+ +N+G+ H YA+ D + W G + V D + P DC
Sbjct: 304 ISTNQGILHRYANEDVSLGAWMLGLEVEHV-DERSMCCGTPPDC 346
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,904,387
Number of Sequences: 28952
Number of extensions: 270142
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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