Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a07r
         (376 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   1.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   3.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   3.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   7.2  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    20   9.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   9.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 361 TLLVLGPGLPASEGPPMLLREP 296
           TLLVLG         P+ +REP
Sbjct: 8   TLLVLGASAEDDTSGPVFVREP 29


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 61 PASPESHPST 32
          P SPE+HP T
Sbjct: 37 PKSPENHPET 46


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 145 RGPPESPLQ---VLRPLEPSTQ 201
           RGPP +PLQ   V   L+P  Q
Sbjct: 58  RGPPRTPLQPKLVAGKLKPKRQ 79


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 124 LPPLPMVRGPPESPLQVL 177
           +PPL    GPP  P  V+
Sbjct: 114 VPPLTPSPGPPSHPYTVI 131


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 61  PASPESHPSTP 29
           P SPES  STP
Sbjct: 421 PESPESSSSTP 431


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -3

Query: 170 CSGDSGGPLTIGSGGSRQLIGI 105
           CSG  GG +  G+     L+ +
Sbjct: 135 CSGGKGGGVIQGTASEATLVAL 156


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 123 PSTDRYHIVRISSRLPERPPCRLRQ 49
           P   +Y  V I+   P R  C+L Q
Sbjct: 189 PDDCQYFYVCINGDTPRRSGCKLGQ 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,138
Number of Sequences: 336
Number of extensions: 1601
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)