Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a07r
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   5.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   9.0  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       24   9.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    24   9.0  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    24   9.0  

>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 93  ISSRLPERPPCRLRQSHILQL 31
           I   L E   CR+R  H+LQL
Sbjct: 496 IDRHLKEYDSCRVRMEHVLQL 516


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 334 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPARLETM*SLP 209
           P+S   P +  +P T K+A+   R  P+PSA A L+T   +P
Sbjct: 382 PSSSRSPSV--DPNTVKSAQHIPRMSPSPSASA-LKTQSHVP 420


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 84  RLPERPPCRLRQSHILQL 31
           R PERPP RL +  ++ L
Sbjct: 96  RFPERPPSRLNKIQVMIL 113


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 31  ELKDVTLAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLR--PLEPS 195
           EL+  T A P   P   P   P    PI  + PP+P    PP  P   ++  P  PS
Sbjct: 136 ELRPPTSAPPR--PSIPP-PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = +2

Query: 296 WLP----KQHRRSFRSRQPRPKYQQS 361
           WLP    K+HR+S  S  P PK+ ++
Sbjct: 276 WLPAVASKEHRKSLSSFIPLPKWMKT 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,253
Number of Sequences: 5004
Number of extensions: 24919
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)