Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a07f
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 50 5e-07
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 41 3e-04
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.002
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 38 0.002
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 38 0.003
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 30 0.79
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 3.2
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 3.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 5.5
AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical ... 27 5.5
AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical ... 27 5.5
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical pr... 26 9.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 26 9.7
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 26 9.7
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 26 9.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 26 9.7
DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin p... 26 9.7
AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin p... 26 9.7
AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal che... 26 9.7
AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal che... 26 9.7
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 50.4 bits (115), Expect = 5e-07
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Frame = +3
Query: 96 RQVSLQVITNAVCAR--TFGNNVIIASTLCVDGSNGR-STCSGDSGGPLTIGSGGSRQLI 266
R++ + +++ C+ + + + S LC S G+ +C GDSGGPL G +L
Sbjct: 197 REIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELT 256
Query: 267 GITSFGSAQGCQR-GHPAGFARVTSFNSWI 353
G+ S+G GC R G P + V S ++WI
Sbjct: 257 GVVSWGI--GCARPGMPGVYGNVHSASTWI 284
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 41.1 bits (92), Expect = 3e-04
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Frame = +3
Query: 81 NNQQKRQVSLQVITNAVCARTFGN----NVIIASTLCVDGSNGRSTCSGDSGGPLTI-GS 245
N+Q + S+ +I++ C +T+ +V I G+ T GDSGGPL I S
Sbjct: 179 NSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHGTAPGDSGGPLLIHKS 238
Query: 246 GGSRQLIGITSFGSAQGC-----QRGHPAGFARVTSFNSWIRARI 365
G IGITS+G A G Q P + R++ + WI+ I
Sbjct: 239 NGEYVQIGITSYG-ADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 150 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 323
++ I A+++ V + TC GDSGG L + G LI ITSFG+ +GC A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274
Query: 324 ARVTSF 341
RV +
Sbjct: 275 TRVDMY 280
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 102 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 275
++L T A C +G ++ S C ++ CSGDSGG LT S + +I I
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294
Query: 276 SFGS 287
S+GS
Sbjct: 295 SYGS 298
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 37.9 bits (84), Expect = 0.003
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 195 GRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-QRGHPAGFARVTSFNSWIRARI 365
G +C GDSGGP G+ L G+ S+G GC Q+ P + V + SWI A I
Sbjct: 204 GIDSCQGDSGGPFACRREDGAFVLAGVISWG--DGCAQKKQPGIYTMVAPYLSWISAII 260
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 29.9 bits (64), Expect = 0.79
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +3
Query: 60 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 230
+ AA+G NN S +V + A+ FG + I + GS G G SGG
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478
Query: 231 LTIGSGGSRQLIGITSFGSA 290
G+GG+R S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 54 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 227
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 54 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 227
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +3
Query: 165 ASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRG 308
A+TL G RST SG G + GSG G T+ GS G G
Sbjct: 1126 ATTLST-GDAVRSTTSGSGSGQSSTGSGAGGS--GTTASGSGSGGSSG 1170
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +3
Query: 165 ASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRG 308
A+TL G RST SG G + GSG G T+ GS G G
Sbjct: 1126 ATTLST-GDAVRSTTSGSGSGQSSTGSGAGGS--GTTASGSGSGGSSG 1170
>AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical
protein C09E8.1b protein.
Length = 756
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 169 EAMITLFPNVRAQTALVMTWRLTW 98
E FP++ QTA ++TW + W
Sbjct: 177 ETFTWAFPSIPLQTAHILTWLIIW 200
>AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical
protein C09E8.1a protein.
Length = 783
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 169 EAMITLFPNVRAQTALVMTWRLTW 98
E FP++ QTA ++TW + W
Sbjct: 177 ETFTWAFPSIPLQTAHILTWLIIW 200
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 111 QVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIG-ITSFGS 287
Q++ N R +IA V GS+ C GDSG P+ G R L+G + GS
Sbjct: 182 QMMVNLSVRRIGKRKYLIAKA--VTGSS--RACMGDSGSPVYCFVNGKRILVGTVAHIGS 237
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 PGLPASEG-PPMLLREPTTNKNAK*ASRSLPTPSAP 138
PG P + G PP+ EPTT K + P P P
Sbjct: 125 PGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGP 160
>Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical
protein T01H3.3 protein.
Length = 599
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 226 PPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTALVMTWRLT 101
P E P V+ P+T+ E + +F R +T V R T
Sbjct: 101 PTEKPAPVITTETPTTRETEKPVPIFITNRPETTTVRAVRTT 142
>Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical
protein K01C8.2 protein.
Length = 389
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 120 TNAVCARTFGNNVIIASTLCVDGSNGRST---CSGDSG 224
TN C N AS++CV +NG+ CS SG
Sbjct: 38 TNLFCTSVGSNTDCPASSICVTAANGQGVLICCSQPSG 75
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 PGLPASEG-PPMLLREPTTNKNAK*ASRSLPTPSAP 138
PG P + G PP+ EPTT K + P P P
Sbjct: 120 PGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGP 155
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 26.2 bits (55), Expect = 9.7
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +3
Query: 144 FGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAGF 323
FG N + + G SG++GG GSG + G T FGS G +G
Sbjct: 58 FGGNNNVGPRFGNGNAGGTGFGSGNAGGT-GFGSGNA----GGTGFGSGNAGGTGFGSGN 112
Query: 324 ARVTSFNS 347
A T F S
Sbjct: 113 AGGTGFGS 120
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 26.2 bits (55), Expect = 9.7
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +3
Query: 144 FGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAGF 323
FG N + + G SG++GG GSG + G T FGS G +G
Sbjct: 58 FGGNNNVGPRFGNGNAGGTGFGSGNAGGT-GFGSGNA----GGTGFGSGNAGGTGFGSGN 112
Query: 324 ARVTSFNS 347
A T F S
Sbjct: 113 AGGTGFGS 120
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 PGLPASEG-PPMLLREPTTNKNAK*ASRSLPTPSAP 138
PG P + G PP+ EPTT K + P P P
Sbjct: 120 PGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGP 155
>DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin
proteoglycan-4 protein.
Length = 782
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 186 GSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQG 296
GS+G ++ G+S G GSG + + I S G G
Sbjct: 562 GSSGEASEEGESSGSEDQGSGNYKMIESIESSGEFSG 598
>AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin
proteoglycan protein 4 protein.
Length = 782
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 186 GSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQG 296
GS+G ++ G+S G GSG + + I S G G
Sbjct: 562 GSSGEASEEGESSGSEDQGSGNYKMIESIESSGEFSG 598
>AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform b protein.
Length = 273
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 253 LPPLPMVRGPPESPLQVLRPLEPSTQR 173
+ P P +R P + PL V RP+ ST +
Sbjct: 138 MDPTPSLRLPKKEPLPVQRPMARSTPK 164
>AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform a protein.
Length = 214
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 253 LPPLPMVRGPPESPLQVLRPLEPSTQR 173
+ P P +R P + PL V RP+ ST +
Sbjct: 79 MDPTPSLRLPKKEPLPVQRPMARSTPK 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,634
Number of Sequences: 27780
Number of extensions: 187813
Number of successful extensions: 840
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -