Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a07f
(422 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 33 0.080
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase... 32 0.14
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 31 0.24
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 1.3
At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami... 28 3.0
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 28 3.0
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa... 27 4.0
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 27 4.0
At1g26150.1 68414.m03192 protein kinase family protein similar t... 27 4.0
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 27 5.2
At1g19960.1 68414.m02501 expressed protein 27 5.2
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 27 6.9
At1g67035.1 68414.m07623 expressed protein ; expression supporte... 26 9.1
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 33.1 bits (72), Expect = 0.080
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 295 P*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPS 182
P PN +IP LPP+P++ PP P L P P+
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPT 321
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 283 PNDVIPI--S*RLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMIT 155
PN +IP + LPP P++ PP P L P P+ + + T
Sbjct: 274 PNPLIPSIPTPTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPT 318
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 253 LPPLPMVRGPPESPL-QVLRPLEPS 182
+PP+P++ G P +PL + PL PS
Sbjct: 370 IPPVPLIPGIPPAPLIPGIPPLSPS 394
>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK9) mitogen-activated protein
kinase kinase (MAPKK) family, PMID:12119167
Length = 310
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 87 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGG 251
+++RQ++L++ + R F + A+T V G NG S C + L G+GG
Sbjct: 5 RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISACDLEKLNVLGCGNGG 59
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 31.5 bits (68), Expect = 0.24
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 171 TLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGH 311
TL G GRS G SGG L++ + SR+L + S+ RGH
Sbjct: 121 TLISTGQGGRSKIDGWSGGGLSVDA--SRELTSSSPSSSSASASRGH 165
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 43 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 174
P PP PT N A +S P P AP RL T + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772
>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
protein low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 432
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 240 GSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSWIRA 359
G GSR+ IT F Q C H + T +N IRA
Sbjct: 356 GGRGSRRRAFITHFTGCQPCSGDHNPSYDGDTCWNEMIRA 395
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +3
Query: 57 TSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLT 236
+++A SG + + V + G + T S G +T G SGG T
Sbjct: 478 STEAGSGTSTETSSMGGGSAAAGGVSESSSGGSTAAGGT-SESASGGSATAGGASGGTYT 536
Query: 237 IGSGGS 254
+GGS
Sbjct: 537 DSTGGS 542
>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 301
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 35 LGCRLRKDLRCCFGSQQPTKTPSEPP 112
L C KDLR CF P P PP
Sbjct: 10 LSCLQFKDLRFCFRQYPPPPPPPPPP 35
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
subsp. vulgare]
Length = 1225
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 189 SNGRSTCSGDSGGPLTIGSGGSRQLIGI 272
SNG TC GD G L SGG +Q I I
Sbjct: 1107 SNGYDTCCGDRGVQL---SGGQKQRIAI 1131
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 250 PPLPMVRGPPESPLQVLRPLEPS 182
PP P + GPP + + V P EPS
Sbjct: 77 PPSPSLTGPPPTTIPVSPPPEPS 99
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 186 GSNGR-STCSGDSGGPLTIGSGGSRQLIGITSFG 284
GSNG SG+SGG GSGGS G +S+G
Sbjct: 38 GSNGGWGWRSGNSGGSSGSGSGGSDSNSGGSSWG 71
>At1g19960.1 68414.m02501 expressed protein
Length = 64
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 165 ASTLCVDGSNGRSTCSGDSGGPLTIGSGGS 254
+ST V G G S C+G GG + GSGGS
Sbjct: 8 SSTTTVGGIAGGSGCNGGGGGSGS-GSGGS 36
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +3
Query: 186 GSNGRSTCSGDS----GGPLTIGSGGSRQLIGITSFGS 287
GS+GRS G S GG + SGGS + G SFGS
Sbjct: 540 GSSGRSGGGGGSYGGSGGSSSRYSGGSDRSSGFGSFGS 577
>At1g67035.1 68414.m07623 expressed protein ; expression supported
by MPSS
Length = 229
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 156 VIIASTLCVDGSNGRSTCSGDSGGPLTI-GSGGSRQLIG 269
+ +A+ ++G G+ G GG ++ G GG R ++G
Sbjct: 186 ISMAAASAINGGGGKRRSIGGGGGRKSLGGGGGGRTILG 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,792,581
Number of Sequences: 28952
Number of extensions: 178874
Number of successful extensions: 700
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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