Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06r
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    29   0.59 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   4.2  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.6  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +1

Query: 208 HRYHYWQYRSRLRHNSSKCIPRQATY---HHLQLIN*NHSISIEMYLLLCTDF---ICLY 369
           HR +++   SR+ H    C+ + +T+     L+L    HS++    + L +     +CL+
Sbjct: 108 HRVYFFSSSSRVLHQKWTCVAQMSTHLPSDPLELCR-IHSVAWSPLVSLPSSSPWGVCLF 166

Query: 370 ICFFKSGNVHVVVLS 414
               +SG+VH+ ++S
Sbjct: 167 ALGAESGHVHLSIMS 181


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = -3

Query: 316 YGFN*LIEDDGTWPDVEYIWRNYALNATCIASNDICATYSYYYDGKVENSTAMCTRAVNS 137
           Y F  L   D +     Y  R   + A      ++ A+Y   Y+G+   S   C++A N 
Sbjct: 243 YTFILLPPIDSSETSTRYHKRQVDMEAFGEEIEEVVASYEKNYNGRCYISEEACSKATND 302

Query: 136 NGDAITSGCYTQTDGSYV 83
                    Y Q D  YV
Sbjct: 303 CSGHGRCSKYGQLDSCYV 320


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 487 LMILSHWQLCLSWWIFLLLICGRRAYGSSDS 579
           L++L+  QL   +W+ L+L  G RA+ ++D+
Sbjct: 331 LILLTALQLVNIYWLILILRIGYRAFTTNDT 361


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 166 LSFPPFHHSNN 198
           L+ PPFHH NN
Sbjct: 250 LALPPFHHHNN 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,109
Number of Sequences: 5004
Number of extensions: 59933
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)