Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06r
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0737 + 5492446-5492770,5492818-5493614                           29   3.3  
08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108...    28   5.7  
03_02_0102 + 5637469-5639064                                           28   5.7  
08_01_0883 + 8672020-8672193,8672343-8672458,8672604-8672756,867...    28   7.5  
01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124     28   7.5  
12_02_0095 + 13559997-13560232,13561295-13561683,13562092-135623...    27   9.9  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    27   9.9  

>02_01_0737 + 5492446-5492770,5492818-5493614
          Length = 373

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 68  EAHSCDVAAVGLRIASASYGVTVAVHCTGAHGC*VFHLSIIVITVGST 211
           + H C++  VG  ++        A+   G  G  VFH+SII ++  S+
Sbjct: 227 KVHDCNLPFVGQAVSIGGSLFAAAMPNNGGGGASVFHMSIIKVSSSSS 274


>08_02_0917 -
           22609543-22609852,22609925-22610266,22610596-22610858,
           22611318-22612349
          Length = 648

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -3

Query: 289 DGTWPDVEYIWRNYALNATCIASNDICATYSYYYDGKVENSTAMCTRAVNSNGDAITSGC 110
           +G+W    + W N  +++  IA+ D         DG   +   +    + S  D  TS  
Sbjct: 384 NGSWA-APHPWLNLFISSRDIAAFDRAVLNGMLADGV--DGPMLIYPMLKSKWDPATSVA 440

Query: 109 YTQTDGSYVTRVC-FCRPIPGGLP 41
               +  Y+  +  FCRP PGG P
Sbjct: 441 LPNGEIFYLVALLRFCRPYPGGGP 464


>03_02_0102 + 5637469-5639064
          Length = 531

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 8   NREAFSRCIIAWQSSRDRSAEAHSCDVAAVGLRIASASYGVTVAVHC 148
           NR+ F+  +  W+S+ D  AEA   ++  +G+     +Y   +  HC
Sbjct: 218 NRQTFNILLSGWKSAED--AEAFVAEMRELGVEPDLVTYNSLIDCHC 262


>08_01_0883 +
           8672020-8672193,8672343-8672458,8672604-8672756,
           8672868-8673195,8673250-8673480,8673567-8673707,
           8673805-8674002,8674467-8674754
          Length = 542

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 151 GCTWLL-SFPPFHHSNNCR*HRYHYWQYRSRLRHNSSK 261
           GC+ L+ +F  F+ S  CR   Y YW  R  ++ +  K
Sbjct: 336 GCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFK 373


>01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124
          Length = 508

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = -3

Query: 235 TCIASNDICATYSYYYDGKVENSTA--MCTRA---VNSNGDAITSGCYTQTDG 92
           TC A +  C  YSY Y G   N+TA  +   A        D +  GC   T+G
Sbjct: 169 TCSADDSPCG-YSYVYGGGAANTTAGLLAVDAFAFATVRADGVIFGCAVATEG 220


>12_02_0095 +
           13559997-13560232,13561295-13561683,13562092-13562387,
           13562475-13563361,13563440-13563562,13563693-13563981,
           13564211-13564249
          Length = 752

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = -1

Query: 141 TATVTP*LADAIRKPTAATSQECASADRSREDCHAIMQREKASLFQ 4
           TAT     A A  +PTA+T    AS DRS   C  ++ R+K S+ Q
Sbjct: 52  TATAATEPAAAATEPTASTEPGAASTDRS--IC-GVIGRQKFSILQ 94


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 270 WNTFGGIMP*TRPVLPVMISVLPTVITMMERWKTQQPCAPVQ 145
           WN FGG  P  R V   +++ L T  +    W  ++   PV+
Sbjct: 226 WNLFGGYAPIPRDVQDTVMTELMTTSSKKLFWINKRNLVPVE 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,235,693
Number of Sequences: 37544
Number of extensions: 384650
Number of successful extensions: 968
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)