Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06r
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                29   2.5  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   4.4  

>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = +1

Query: 181 FHHSNNCR*HRYHYWQYRSRLRHNSSKCIPRQATYHHLQLIN*NHSISIEMYLLLCTDFI 360
           +H   N R HRYH+  +    +HN  +       +HH Q  + +H   I + +++  + I
Sbjct: 35  YHKLKNPR-HRYHHHHHH---QHNHHQHHHHHNHHHHHQQHHHHHHHIINIIVIIIVNII 90

Query: 361 CLYICFFKSGNVHVVVLS 414
            + I      N+ ++V++
Sbjct: 91  IIIIIIIIIINIIIIVIN 108


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 187 HSNNCR*HRYHYWQYRSRLRHNSSKCIPRQATYHHLQLIN*NHSISIEMYLLL 345
           H +  R H +H+ +Y  R R+ +   I  Q   HH  +I  N +I I M  ++
Sbjct: 333 HRHRHRHHHHHHHEYNRRHRYFTDINITIQIIRHHFIIIIINITIIIMMITIM 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,436,186
Number of Sequences: 59808
Number of extensions: 461268
Number of successful extensions: 1116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)