Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06r
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    33   0.24 
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical pr...    28   6.7  
D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic nucleoti...    28   6.7  

>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 283 TWPDVEYIWRNYALNATCIASNDICATYSYY 191
           TWPD+   W    L   CI SN+ C  +SYY
Sbjct: 36  TWPDMIRHWPKTTL---CIVSNEFCERFSYY 63


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
           protein W03A3.2 protein.
          Length = 1540

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 70  FCRPIPGGLPCNNATRKSLSISI 2
           F RPIPG LP +++ RKS+  +I
Sbjct: 876 FDRPIPGSLPISSSRRKSVLTNI 898


>Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical
           protein ZC84.2 protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 484 YLMILSHWQLCLSWWI 531
           Y++I+ HW  CL +WI
Sbjct: 315 YIVIIIHWNACLYFWI 330


>D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 484 YLMILSHWQLCLSWWI 531
           Y++I+ HW  CL +WI
Sbjct: 315 YIVIIIHWNACLYFWI 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,839
Number of Sequences: 27780
Number of extensions: 347310
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)