Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06r
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07450.1 68417.m01143 hypothetical protein includes At2g05890...    29   2.7  
At1g44010.1 68414.m05077 hypothetical protein                          29   3.6  
At2g06914.1 68415.m00786 hypothetical protein                          27   8.3  
At1g17750.1 68414.m02197 leucine-rich repeat transmembrane prote...    27   8.3  

>At4g07450.1 68417.m01143 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 439

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 452 YVWVLKTKCQQALDSTTTCTLPDLKKHMYKHIKSVQSNKYIS 327
           Y  ++   CQ++ D T  C +   K ++Y   KSV ++  +S
Sbjct: 105 YAEIVDQACQESADGTVVCLIRFAKINLYNDTKSVSNSFDVS 146


>At1g44010.1 68414.m05077 hypothetical protein
          Length = 227

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -3

Query: 478 ILWVVSYLCMCGS--LKQNVNKL*TAQLHAHYQT*KNICTNI*NQYKVTNTFLYLYYGFN 305
           ++W++ Y C C +  L Q +N++ +          KNIC      + V   FL++Y+   
Sbjct: 89  LVWIIGYTCGCVAILLIQFINRISSRSYEEIMDVLKNICEYFFVGWVV--LFLWMYHS-- 144

Query: 304 *LIEDDGTWPDVEYIWRNYALNA-TCI 227
                   + + +Y W   A  A TCI
Sbjct: 145 ---SSSSLYDNTQYFWLCMAFLAFTCI 168


>At2g06914.1 68415.m00786 hypothetical protein
          Length = 158

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 148 HGCTWLLSFPPFHHSNNCR*HRYHYWQYRSRLRHNSSKCIPRQATYHHL 294
           H  T L     +HH ++    R H+   RS +    ++ +  Q  YHHL
Sbjct: 20  HSITSLDHLVEYHHLHHLTITRSHHLTTRSSIFITVTRSLYHQVEYHHL 68


>At1g17750.1 68414.m02197 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           INRPK1 GI:1684913 from [Ipomoea nil]
          Length = 1088

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 544 ICGRRAYGSSDSVIPHEFRQCQGSALLSTYK 636
           +C + +Y  S ++I  EF+ C+G   LST+K
Sbjct: 708 LCIQASYSVS-AIIRKEFKSCKGQVKLSTWK 737


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,446
Number of Sequences: 28952
Number of extensions: 310288
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)