Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06f
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 285 RETTSGASHGTPSASRVASWHVAFRNTLS 199
           R+T +   +  P+ + V  W+  ++N LS
Sbjct: 657 RQTLAMWLNHNPNYAEVTDWYTGWKNMLS 685


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 209 FLNATCQDATRLADGVPC 262
           F  + CQ+   L D  PC
Sbjct: 53  FTGSNCQNRINLCDSSPC 70


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 257 PCEAPLVVSRKINN 298
           P E P + SRK+NN
Sbjct: 77  PSELPALKSRKLNN 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,811
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)