Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06f
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.9  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   6.5  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   6.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.6  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   8.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   8.6  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 127 LRNSNTHARSTMLPLHLVGSEVQQRKRVPKRN 222
           + N+  H R+++  L    S V+Q++ +PK+N
Sbjct: 91  ISNARQHPRNSVSRLSRSSSNVRQQRDIPKQN 122


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +3

Query: 111 FY-WLAASQ*QHTREK-HDASATL 176
           FY W ++S  QHTRE  HD++++L
Sbjct: 240 FYSWTSSSSLQHTRENLHDSTSSL 263


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 543 LFELHTNMSQLLRYRER*KTRIKHP 469
           L E HT  +QL RYR   +T + HP
Sbjct: 691 LEEYHTLKTQLERYRTDVRTVVNHP 715


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 94   KVVINFNHYNNMSLWSLRYLRIHQKCGHKK 5
            K+++N++ Y    ++ + +++I QKC H K
Sbjct: 938  KILMNYD-YERDEVYLMIFIKIFQKCVHSK 966


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 178 PSVAEASCFSRVCCYCEAASQ*NSCTH 98
           P   E  C  R+C YC +    N C H
Sbjct: 88  PVAVEPGCVCRLCDYCRSGRY-NLCPH 113


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 184 TQPSVAEASCFSRVCCYCEAASQ*NSCTHYKVVINFNHYNNMSLW 50
           T P +    CFS  C + E         +Y   +N+ HY +  LW
Sbjct: 452 TCPWLYVGMCFSTFCWHVE--------DNYTYSVNYQHYGDTKLW 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,872
Number of Sequences: 5004
Number of extensions: 45714
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)