Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06f
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371...    28   5.0  
03_05_0879 - 28447816-28447989,28448933-28449358                       28   5.0  
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178...    28   5.0  
11_01_0025 + 173253-173424,173534-173781,174307-174400,174467-17...    27   8.7  
06_03_0881 - 25623679-25623843,25624104-25624195,25624287-256244...    27   8.7  

>04_04_0809 -
           28236216-28236679,28236776-28236899,28237049-28237191,
           28237697-28237832,28238413-28238888,28238940-28239024
          Length = 475

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
 Frame = -1

Query: 579 SWNVCLRLPLGA---LFELHTNMSQLLRYRE 496
           SWN+CLR+ +GA   L  LH++  Q++ YR+
Sbjct: 241 SWNLCLRIAIGAARGLAFLHSSERQII-YRD 270


>03_05_0879 - 28447816-28447989,28448933-28449358
          Length = 199

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 113 LLACGFAIATHTREARCFRYT 175
           L+ACGFA+AT+   A  FR T
Sbjct: 143 LVACGFAVATYNEGATDFRET 163


>03_01_0225 +
           1784211-1784324,1784398-1784668,1784992-1785248,
           1785338-1785450,1791599-1791746,1791943-1792080,
           1792448-1792525
          Length = 372

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 291 LIISLHLSTARQRPLIIFATRFIGTSTS 374
           L+IS  ++TA    L I  TRFIGTS S
Sbjct: 169 LLISTSMATASSYFLYILNTRFIGTSCS 196


>11_01_0025 +
           173253-173424,173534-173781,174307-174400,174467-174709,
           176174-176412,176496-176691,176870-177192
          Length = 504

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 115 IGLRLRNSNTHARSTMLPLHLVGSEVQQRKRVPKRNV 225
           I L LRN++T       PLH+ G  V +    P+RN+
Sbjct: 281 IKLLLRNTSTTDHQLQWPLHVYGLVVTRDSLDPRRNL 317


>06_03_0881 -
           25623679-25623843,25624104-25624195,25624287-25624446,
           25624586-25624668,25624845-25624913,25625480-25625555,
           25625645-25625895,25626387-25626537
          Length = 348

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 270 GASHGTPSASRVASWHVAFRNTLSLLNLGPN 178
           G + G  S SR A+ HVA  +T + + LGPN
Sbjct: 7   GQTVGRSSFSRAAAPHVASSSTAAGVKLGPN 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,390
Number of Sequences: 37544
Number of extensions: 291455
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)