Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a06f
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    27   0.19 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    27   0.19 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 185 PRFNNESVFLNATCQDATR-LADGVPC 262
           PR N++S  L+  C D  + L+DG+ C
Sbjct: 51  PRINSKSPLLSCACPDGLKLLSDGLMC 77


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 185 PRFNNESVFLNATCQDATR-LADGVPC 262
           PR N++S  L+  C D  + L+DG+ C
Sbjct: 51  PRINSKSPLLSCACPDGLKLLSDGLMC 77


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 187 RTQPSVAEASCFSRVCCYC 131
           + QPSVA  + FS+  CYC
Sbjct: 76  QVQPSVASTTGFSKE-CYC 93


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 187 RTQPSVAEASCFSRVCCYC 131
           + QPSVA  + FS+  CYC
Sbjct: 76  QVQPSVASTTGFSKE-CYC 93


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 242 AASHPGTLRLGTRFRC*TSDPTKCSGSIV 156
           + S+P T  L T+       P+KCS + V
Sbjct: 342 SVSYPSTETLNTKCNTLERTPSKCSQTSV 370


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 465 SRRLDETDRDERPH 424
           +++ D+TDRDE  H
Sbjct: 116 TQQADQTDRDELSH 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,114
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)