Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a05r
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    58   1e-09
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    31   0.20 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      29   0.79 
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    28   1.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.2  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   3.2  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   4.2  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.6  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   5.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   5.6  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   9.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.7  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   9.7  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   9.7  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   9.7  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = -3

Query: 468 SILDLDTVKIGHLLQMTPMFLKKMVVASQDALPVRLKGTHYLNTPTGFETVFNAVKALLN 289
           +I+DL  V I  +  +   ++++    SQD  P R+   + +N P GF + FN +K  L+
Sbjct: 170 TIMDLKGVGITSIHSVYS-YIRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLD 228

Query: 288 EKNKKRLYVHNQNYEE-MYKYIPKDILPVEYGGN 190
           E   K++++   NY+  + + IP D LP + GGN
Sbjct: 229 EATVKKIHILGSNYKSALLEQIPADNLPAKLGGN 262


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -3

Query: 339 TPTGFETVFNAVKALLNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIID 163
           +P  F +V+N +K  +  +   ++ V  Q+  ++ KYI   ++P   GG    I + I+
Sbjct: 244 SPWIFRSVWNIIKGWIKPEIAAKI-VFTQSANDLEKYIDYSVIPTSLGGGNKKIFQYIE 301


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 261 HNQNYEEMYKYIPKDILPVEYGGNGG-SIEEIIDYWKKKVKEYSDWLEEDDQYGTDESKR 85
           H  +Y  M + +     P+E       S    +++W+  + E SD  EE+D      SK 
Sbjct: 544 HRSSYVYMNELVDHFFPPIEVSTRDEVSSFTDVNFWRSPLLELSD--EEEDDTNKSTSKS 601

Query: 84  PGKPKTAE 61
           P  PK  +
Sbjct: 602 PKTPKNTK 609


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 49  PEHILSGLRFPWSLGLVRTILIIFFQPVTVFLYFFLPVIYNFFNRTTVPAIF 204
           P  +  G  F +  G+V  ++ I        + FF+P I+NF    +VP +F
Sbjct: 279 PSRVFVGDTFCYFAGMVMAVVGILGHFSKTLMLFFIPQIFNF--ALSVPQLF 328


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 112  IIFFQPVTVFLYFFLPVIYNFFNRTTVPAIF 204
            +IF   +  +++  LPVI   F R T+P  F
Sbjct: 956  VIFGSNIEEYMHLVLPVIIRSFERDTIPLGF 986


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 94  LVRTILIIFFQPVTVFLYFFLPVIY 168
           L+ TIL+ FF  + VFL   LP+I+
Sbjct: 34  LLITILLTFFVSLCVFLSIILPLIF 58


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 393 VASQDALPVRLKGTHYLNTPTGFE-TVFNAVKALLNEKNKKR 271
           + SQ  +P+ + GTHY      FE T  +A+  L N+ +  +
Sbjct: 88  IHSQGKIPIVVGGTHYYLQSLLFEDTTLSAIDKLTNDSSPSK 129


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 100 RTILIIFFQPVTVFLYFFLPVIY--NFFNRTTVPAIF 204
           + + +IF +P+ V    +L V+Y  N+ N    P +F
Sbjct: 328 QAVSLIFTEPIVVCFTLYLTVVYIINYINFEGYPIVF 364


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 432 LLQMTPMFLKKMVVASQDALP-VRLKGTHYLNTPTGFE---TVFNAVKALLNEKNKKRLY 265
           +L  TP   K+M ++S DA+  +  K     N     E   TV  A   L +E N+   +
Sbjct: 272 VLNTTP---KEMQISSLDAVDKLEDKPVSNDNIKANIESSTTVDRASSQLESENNESTFF 328

Query: 264 VHNQN 250
           VHNQN
Sbjct: 329 VHNQN 333


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
 Frame = +3

Query: 231 ICTSLHNSGCGRRGVSYFFRSVM--LL--QH*KQFRILSEYLNNGYL*VE-LVMRPEKQP 395
           I  +L  SG G   +S  F S    L+  Q   Q  +L     NG   V+  V  PE   
Sbjct: 465 ISPTLSGSGSGLTPLSSHFPSAATGLVGGQVYPQSSVLQSSKINGSAKVQPSVKLPEWLQ 524

Query: 396 PFFSRTLESFVINDLFLQYLNLKLTKCRQP 485
           PF      SF   DL  +  +LKL    QP
Sbjct: 525 PFSGNNHNSFATQDLLTRVSSLKLVDDEQP 554


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 334 DRIRNCFQCCKSITERKK*ETPLR 263
           DR+  CFQC KS ++    E P+R
Sbjct: 30  DRLHPCFQCVKSNSQCFYPEDPIR 53


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = -3

Query: 408 LKKMVVASQDALPVRLKGTHYLNTPTGFETVFNAVKALLNEKNKKRLYVHNQNYEEMYKY 229
           LK M+   +   P  L        P  F+ V++ +K+ L+     ++    +NY ++ +Y
Sbjct: 254 LKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKF-TRNYRDLQQY 312

Query: 228 IPKDILPVEYGG 193
           I  D +  E+GG
Sbjct: 313 INPDNILKEFGG 324


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
 Frame = -3

Query: 159  WKKKVKEYSDWLEEDDQYGTDESK--RPGKPKTAEDMFGVEGSFRQLEF 19
            WK+K++EY  W    +Q      K  +    K  E      G    +EF
Sbjct: 1128 WKEKMREYKKWQSTANQRAKQMEKFEKSATEKQKEQALKEAGDISWIEF 1176


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 366 RLKGTHYLNTPTGFETVFNAVKALLNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGN 190
           +++G H++ T TGF+ + N  KAL  EK  K +      YEE   Y+   I+  + G N
Sbjct: 369 KVEGFHHVETLTGFKWLGN--KALELEKQGKFI---GLAYEEALGYMVGSIVRDKDGVN 422


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 186 GSIEEIIDYWKKKVKEYSDWLE 121
           GSI +I   W+KK+ EY  +LE
Sbjct: 172 GSIYDICFRWRKKLIEYRAFLE 193


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 627 PKTATSDSPRVSIIIPGRYDADKYNISDVMAVSLVLQKIIMMEDDNAMVAGILSILD 457
           P T  +D+    + IP R   D+  I  VM+  L    +++  D  + V  +  ILD
Sbjct: 187 PNTLITDANNSLVSIPSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILD 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,844
Number of Sequences: 5004
Number of extensions: 65962
Number of successful extensions: 211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)