Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a05r
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 47 2e-05
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 45 6e-05
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 39 0.003
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 35 0.066
11_05_0072 - 18832152-18832341,18832470-18832582 31 0.62
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 31 0.62
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 31 0.82
01_06_1698 - 39264075-39264468,39264545-39264696,39264780-392648... 31 1.1
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837 30 1.9
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388... 30 1.9
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044 29 4.4
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 29 4.4
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199... 29 4.4
01_02_0024 + 10306193-10306247,10306536-10306717 28 5.8
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 28 7.6
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = -3
Query: 384 QDALPVRLKGTHYLNTPTGFETVFNAVKALLNEKNKKRL-YVHNQNYEEM---YKYIPKD 217
Q+ P RL N P FE + VK L+ K+ +++ +V+ +N E M +KYI +
Sbjct: 140 QNHYPERLAIGILFNPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPE 199
Query: 216 ILPVEYGGNGGSIEEIIDYWKKKVKE 139
+LPVE+GG + +Y K VK+
Sbjct: 200 VLPVEFGGKNNVVYSHEEYSKLMVKD 225
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -3
Query: 468 SILDLDTVKIGHLLQMTPMFLKKMVVASQDALPVRLKGTHYLNTPTGFETVFNAVKALLN 289
+ILD+ V + + + + +M D P L + +N +GF+ ++N+VK L+
Sbjct: 213 TILDVHGVGLKNFSKTARELVHRMQKIDSDYYPETLHQMYVVNAGSGFKLIWNSVKGFLD 272
Query: 288 EKNKKRLYVHNQNYE-EMYKYIPKDILPVEYGGN 190
K +++V NY+ + + I K LP GG+
Sbjct: 273 PKTSSKIHVLGTNYQSRLLEVIDKSELPEFLGGS 306
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = -3
Query: 468 SILDLDTVKIGHLLQMTPMFLKKMVVASQDALPVRLKGTHYLNTPTGFETVFNAVKALLN 289
+ILD+ V + + + +M D P L +N +GF+ ++N+VK L+
Sbjct: 209 TILDVQGVGFKNFSKTARELINRMQKIDSDYYPETLHQMFVVNAGSGFKLIWNSVKGFLD 268
Query: 288 EKNKKRLYVHNQNYE 244
K +++V NY+
Sbjct: 269 PKTSSKIHVLGSNYQ 283
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 34.7 bits (76), Expect = 0.066
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 483 VAGILSILDLDTVKIGHLLQMTPMFLKKMVVASQDALPVRLKGTHYLNTPTGFETVFNAV 304
VA +L + DL G + + +K+++ QD P + +N P +
Sbjct: 298 VASLLQVTDLKNSP-GPAKKDLRVAMKQVLDLFQDNYPELVARNILINVPFWYYAFSTLF 356
Query: 303 KALLNEKNKKRLYVHNQNY--EEMYKYIPKDILPVEYGG 193
+ ++ K + + + E + KYIP + +PV+YGG
Sbjct: 357 YPFMTQRTKSKFVIARPSKVTETLLKYIPIEAIPVKYGG 395
>11_05_0072 - 18832152-18832341,18832470-18832582
Length = 100
Score = 31.5 bits (68), Expect = 0.62
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = -3
Query: 174 EIIDYWKKKVKEYSDWLEEDDQYGTDE 94
+I++Y+KK + +YSD+ +ED + +DE
Sbjct: 60 QILEYYKKFLAQYSDYEDEDSEEDSDE 86
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Frame = -3
Query: 477 GILSILDLDTVKIGHLLQMT------PMFLKKMVVASQ------DALPVRLKGTHYLNTP 334
GILS LD I ++Q+T PM K V Q D P + ++N P
Sbjct: 385 GILSQLDFSPSGICSMVQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVP 444
Query: 333 TGFETVFNAVKALLNEKNKKRLYVHN--QNYEEMYKYIPKDILPVEYGG 193
+ + L ++ K + + ++ E +++YI + +PV++GG
Sbjct: 445 WWYLAANKMMSPFLTQRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGG 493
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 31.1 bits (67), Expect = 0.82
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Frame = -3
Query: 477 GILSILDLDTVKIGHLLQMT------PMFLKKMVVASQ------DALPVRLKGTHYLNTP 334
GIL LD I ++Q+T PM K V Q D P + ++N P
Sbjct: 356 GILDQLDFSPSGICSMVQVTDLKNSPPMLGKHRTVTRQALALLQDNYPEFIAKKIFINVP 415
Query: 333 TGFETVFNAVKALLNEKNKKRLYVHN--QNYEEMYKYIPKDILPVEYGG 193
+ V L ++ K ++ ++ E +++YI + +PV++GG
Sbjct: 416 WWYIAANKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGG 464
>01_06_1698 -
39264075-39264468,39264545-39264696,39264780-39264830,
39264946-39265122,39265256-39265348,39265489-39265555,
39265695-39265768,39266007-39266088,39266182-39266255,
39266354-39266383,39266475-39266534,39267524-39268225
Length = 651
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -3
Query: 168 IDYWKKKVKEYSDWLE------EDDQYGTDESKRPGKPKTAED 58
+D +K +K+Y +W+E E++ Y D+ PG+ K ED
Sbjct: 207 LDRYKMFLKQYKEWVEANRDRLEEESYKFDQDYYPGRRKRGED 249
>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
Length = 730
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -3
Query: 318 VFNAVKALLNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGNGGSI----EEIIDYW 157
+F AV +L+EK+ L V N + YK++PK + + G GG + I++YW
Sbjct: 503 IFRAV-VILSEKSNSDLAVEVSNLAQAYKFLPK--VFDRFAGAGGFMFLQDHMILNYW 557
>02_04_0624 + 24538095-24538183,24538429-24538612,24538725-24538886,
24538988-24539225,24539301-24539370,24539439-24539530,
24539799-24539836,24540018-24540039,24540462-24540618,
24540702-24540753,24542144-24542207,24542279-24542362,
24543418-24543543,24543622-24543818,24543903-24544091,
24544186-24544434,24544507-24544556,24544977-24545059,
24545164-24545449,24545751-24545794,24545878-24546626
Length = 1074
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = -3
Query: 264 VHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIIDYWKKKVKEYSDWLEEDDQYGTDESKR 85
+H ++YE++ + + PVE + I D+ +KK +++ + + + E
Sbjct: 819 LHEEDYEDVPDVLASE--PVEAECKSATNNTIFDHIRKKSRDFPNLMLSKSMDSSYEPLI 876
Query: 84 PGKPKTAEDMFGVEGS 37
K KT+ D FG++ S
Sbjct: 877 LKKMKTSGDQFGLDQS 892
>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
Length = 578
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 481 CRHFVNFRFRYCKN 440
C+HFV FR ++C+N
Sbjct: 532 CKHFVTFRMKHCRN 545
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -3
Query: 342 NTPTGFETVFNAVKALLNEKNKKR---LYVHN-QNYEEMYKYIPKDILPVEYGGNGGSIE 175
NTP FE+ + +K L K ++ LY +N ++++ + + D+L +GG
Sbjct: 145 NTPRIFESFWKIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITI 204
Query: 174 EIIDY 160
+I +Y
Sbjct: 205 DIDNY 209
>01_05_0422 -
22018579-22018698,22019548-22019644,22019744-22019908,
22022274-22022339,22022441-22022540,22022662-22023304
Length = 396
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 195 GNGGSIEEIIDYWKKKVKEYSDWLEEDDQYGTDESKRPGKPK 70
G GG +E + W++ ++E D++ +D+++ + R PK
Sbjct: 114 GGGGEADEHMREWEEFLREDEDFINDDERFNLGDRIRALFPK 155
>01_02_0024 + 10306193-10306247,10306536-10306717
Length = 78
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 198 GGNGGSIEEIIDYWKKKVKEYSDWLEEDDQYGTDESKRPGKP 73
GG GG EE+ ++W++ V+ + D ++ D + G P
Sbjct: 10 GGGGGGAEEV-EHWRENVRLFRDSVDGDRKAAATPQVIAGNP 50
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = -3
Query: 546 DVMAVSLVLQKIIMMEDDNAMVAGILSILDLDTVKIGHLLQMTPMFLKKMV--VASQDAL 373
DV + L K ++E N + + D V + H+ + T M+LK + + ++ L
Sbjct: 162 DVTRLLLKQVKGCVLEGTNGSGPALCCVKDR-LVGLVHVKETTSMYLKSAIDDLFAEHKL 220
Query: 372 PVR-LKGTHYLNTPTGFETVFNAVKALLNEKNKKRLYVH 259
++ ++G Y + + FN +++L+ +N YVH
Sbjct: 221 SLKQVRGQGY-DGASNMRGEFNGLQSLIMRENSSAYYVH 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,230,709
Number of Sequences: 37544
Number of extensions: 400151
Number of successful extensions: 1098
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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