Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a05r
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)                33   0.21 
SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07)                   31   0.63 
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         31   0.84 
SB_47444| Best HMM Match : Strep_SA_rep (HMM E-Value=5.9)              30   1.5  
SB_26846| Best HMM Match : Pox_A32 (HMM E-Value=0.0014)                30   1.5  
SB_26107| Best HMM Match : Strep_SA_rep (HMM E-Value=5.8)              30   1.5  
SB_20289| Best HMM Match : DUF1604 (HMM E-Value=3.7)                   30   1.5  
SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)                30   1.5  
SB_42470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   3.4  
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)                   29   4.5  
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_18087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_52317| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 28   7.8  
SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
          Length = 520

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 294 LNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIID-YWKKKVKEYSDWLEE 118
           + EK  K+        +  YK  P + L V     GG+  E+ID Y K  +KEY + +E 
Sbjct: 387 MKEKRMKKQQKRKDKEKAKYKKKPVEKLTVAPSTLGGTTGEVIDRYRKLTLKEYQESVEL 446

Query: 117 DDQYGTDESK 88
              +G   SK
Sbjct: 447 CQMHGVPLSK 456


>SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07)
          Length = 773

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -3

Query: 273 RLYVHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIIDYWKKKVKEYSDWLEEDDQYGTDE 94
           RL +H Q YEE  K +P  +LP  Y       E+ I ++  K++   D L        + 
Sbjct: 259 RLEIHRQMYEEKVKPVP--LLP-SYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTMEM 315

Query: 93  SKRPGKPK 70
           S  P +P+
Sbjct: 316 SVTPAQPQ 323


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -3

Query: 219 DILPVEYGGNGGSIEEIIDYWKKKVKEYSDWLEEDDQYGTDESKRPGKPKTAEDMFGVEG 40
           D+  +E   N  +I   +D WK+K +E    LE++D+     + +PG     EDM   EG
Sbjct: 280 DLDMIEALKNVKAISRAMDEWKRKKEEGQVELEDEDEEDI-YAVKPGPEGDDEDMDTEEG 338

Query: 39  SFRQLEF 19
           + ++  F
Sbjct: 339 AEKEQSF 345


>SB_47444| Best HMM Match : Strep_SA_rep (HMM E-Value=5.9)
          Length = 129

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 159 WKKKVKEYSDWLEED 115
           W+KK +EY DWLEE+
Sbjct: 50  WQKKRQEYQDWLEEE 64


>SB_26846| Best HMM Match : Pox_A32 (HMM E-Value=0.0014)
          Length = 509

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 159 WKKKVKEYSDWLEED 115
           W+KK +EY DWLEE+
Sbjct: 427 WQKKRQEYQDWLEEE 441


>SB_26107| Best HMM Match : Strep_SA_rep (HMM E-Value=5.8)
          Length = 171

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 159 WKKKVKEYSDWLEED 115
           W+KK +EY DWLEE+
Sbjct: 92  WQKKRQEYQDWLEEE 106


>SB_20289| Best HMM Match : DUF1604 (HMM E-Value=3.7)
          Length = 296

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 159 WKKKVKEYSDWLEED 115
           W+KK +EY DWLEE+
Sbjct: 50  WQKKRQEYQDWLEEE 64


>SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)
          Length = 936

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 159 WKKKVKEYSDWLEED 115
           W+KK +EY DWLEE+
Sbjct: 559 WQKKRQEYQDWLEEE 573


>SB_42470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 159 WKKKVKEYSDWLEE--DDQYGTDESKR 85
           W+KK +EY DWL E  +D+   DE+ +
Sbjct: 50  WQKKRQEYQDWLTEQYNDKVRADENDK 76


>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 2629

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 159  WKKKVKEYSDWLEE--DDQYGTDESKR 85
            W+KK +EY DWL E  +D+   DE+ +
Sbjct: 2482 WQKKRQEYQDWLTEQYNDKVRADENDK 2508


>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
          Length = 1133

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 159  WKKKVKEYSDWLEE--DDQYGTDES 91
            W+KK +EY DWL E  +D+   DE+
Sbjct: 1064 WQKKRQEYQDWLAEQYNDKVRADEN 1088


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 177 EEIIDYWKKKVKEYSDWLEED 115
           ++ +  W+KK +EY DWL E+
Sbjct: 50  QQAMGEWQKKRQEYQDWLAEE 70


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 273 RLYVHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIIDYWKKKVKEYS 133
           R++  N + +  + ++P    P + G  GGS+     +WK  V E S
Sbjct: 839 RVHKINSHQDVTWHHVPTKDNPADLGSRGGSVVNADMWWKGIVLEQS 885


>SB_18087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -3

Query: 570 DADKYNISDVMAVSLVLQKIIMMEDDN 490
           DA   + SD+M +++++  IIM+EDDN
Sbjct: 37  DASDDDNSDMMMITMMILIIIMIEDDN 63


>SB_52317| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 681

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 177 EEIIDYWKKKVKEYSDWLEED 115
           ++ +  W+KK +EY DWL E+
Sbjct: 102 QQAMGEWQKKRQEYQDWLGEE 122


>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 366 ELVMRPEKQPPFFSRTLESFVINDLFLQYLNLKLTKCRQPLRCRL 500
           E + + EKQ   +   L ++ I    + YL  K    R PLRCR+
Sbjct: 294 EELKQKEKQHGRYQAVLSNWNIFKAIVSYLLTKAVCTRSPLRCRI 338


>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 115 IFFQPVTVFLYFFLPVIYNFFNRTT 189
           +FF+P     + FLP++ NFF R T
Sbjct: 293 LFFRPFVSQSFGFLPLLRNFFGRMT 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,095,889
Number of Sequences: 59808
Number of extensions: 458411
Number of successful extensions: 1422
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)