Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a05f
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 26 3.5
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 4.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 4.6
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 26 4.6
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.1
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 8.0
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 8.0
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 8.0
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 8.0
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.0
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 176 RTDDQWLLSFLRGCKFSLERTKE 244
R DD LL FLR KF+L+++ E
Sbjct: 47 RLDDATLLRFLRARKFNLQQSLE 69
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 62 PPELAEKARKELNEDPSRINSDIQHL 139
PPE +E E+NEDPS I+ +
Sbjct: 236 PPEDSEDGISEMNEDPSESGEMIEQV 261
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 4.6
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Frame = +2
Query: 35 SMTMSVRALPPELAE--KARKELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQWLLSFL 208
SM ++AL E+ E K L + I+ D + Q R+ ++ L F+
Sbjct: 632 SMISEIKALESEIEENRKTLHSLQFGSTFYEKAIEICVDQHACQLCQRSLDKEEEKL-FV 690
Query: 209 RGCKFSLERTKEKLDLYYSVRTTAPELF-SIKPSNPLFDEILSLGAILVLPKTATSD 376
C ++ K YS T + F ++ + P+FDEI L L KT SD
Sbjct: 691 EHCHSMIDVIPSKSAEVYSHLETLTKTFKNLSEAKPIFDEIELLDKRLSETKTELSD 747
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 131 QHLKDWLSKQPHLRARTDDQWLLSFLRGCKFSLERTKEKL 250
+HL D K PHL+ T W LR F LE K +
Sbjct: 40 EHLIDLEEKSPHLKVDTQPLWKDHVLR--DFGLELQKRTI 77
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 26 WKTSMTMSVRALPPELAEKARKELNE 103
W TS +++LPP L +K ++L +
Sbjct: 68 WVTSKNEKLKSLPPALKKKIERQLQK 93
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 231 SKLNLHPRRNDNSH*SSVLARKCGCLDNQSF 139
+K+ L P ++ S +S+LARKC +D +F
Sbjct: 165 TKIKLKPPQSPLSPTTSLLARKCKHIDLDTF 195
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 284 ELFSIKPSNPLFDEILSL 337
+L+SIKPS P DEI +L
Sbjct: 109 QLYSIKPSQPGIDEIDTL 126
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 8.0
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 356 PKTATSDSPRVSIIIPGRYDADKYNISDVMAVSLVLQKIIMMEDDNAMVAGILSILD 526
P T +D+ + IP R D+ I VM+ L +++ D + V + ILD
Sbjct: 187 PNTLITDANNSLVSIPSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILD 243
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 204 FYEDASSAWKGQRKN*I-YIIPFVQLHQNYSVSNRAI 311
FYED S+ KG +KN + + F Q YS + I
Sbjct: 111 FYEDVSAVTKGWKKNPVNFDSVFNQSRHTYSFGSEDI 147
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 187 SMAIIISTRMQVQLGKDKGKIRFILFRSY 273
S II++T + +G DKG +RF++ S+
Sbjct: 793 SYKIIVAT-IAFGMGVDKGDVRFVIHHSF 820
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,589
Number of Sequences: 5004
Number of extensions: 47354
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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