Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a05f
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0680 - 35497868-35497884,35498058-35501961 29 2.0
07_03_1711 + 28909297-28909329,28909725-28910204,28910300-289104... 29 2.7
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044 29 3.5
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153... 29 3.5
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 3.5
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 29 3.5
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 6.2
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 27 8.2
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +2
Query: 50 VRALPPELAEKARKELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQW 193
V L + E ARKE NE+ NS LK+ LS Q +L DD W
Sbjct: 237 VDLLAKGIVEAARKEKNENVMAKNSPQDALKEVLSGQRYLLV-LDDVW 283
>07_03_1711 +
28909297-28909329,28909725-28910204,28910300-28910428,
28910511-28910567,28910669-28910761,28911278-28911483,
28912757-28912898,28912981-28913170,28913263-28913369
Length = 478
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 93 SLRAFSANSGGNARTDMVIDVFHRMNNYLLL 1
++R +SA GG AR D + D HR LL+
Sbjct: 67 NMRRYSALPGGGARPDTLADRLHRYRGVLLV 97
>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
Length = 578
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 502 CRHFVNFRFRYCKN 543
C+HFV FR ++C+N
Sbjct: 532 CKHFVTFRMKHCRN 545
>05_05_0170 +
22913791-22914315,22914418-22914581,22914675-22915325,
22915425-22915542,22915635-22915823,22915948-22916118
Length = 605
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 101 EDPSRINSDIQHLKDWLSKQPHLRARTDDQWL----LSFLRGCKFSLE 232
++P R+N +H+K+ LS + A T D W L GC + +
Sbjct: 404 DEPLRVNILFKHIKEMLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQ 451
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +2
Query: 80 KARKELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQWLLSFLRG-CKF-SLERTKEKLD 253
+ ++EL+E + ++++L+D L K+ LRA + L++ RG F S +K K D
Sbjct: 640 RRKEELHERRLALEKEVENLRDQLQKERKLRASL-ESGLMNLRRGQVSFPSTIDSKTKAD 698
Query: 254 LYYSVRTTAPELFSIK 301
L V T ++ ++K
Sbjct: 699 L-EEVATAEADILNLK 713
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 195 YYHFYEDASSAWKGQRKN*IYIIPFVQLHQNYSVSNRAIHYLMKY*VWGQYWYYL 359
YY D S+ + K+ + P +QLH N ++ +HY K + Q ++YL
Sbjct: 201 YYEDRADVSNLYVTIDKDILASNPTLQLHNNMEITPNILHY-FKSTYFSQIFFYL 254
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 74 AEKARKELNEDPSRINSDIQHLK 142
++ R E+ EDPSRI ++H++
Sbjct: 162 SQSTRSEMAEDPSRIQPQLEHIR 184
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 104 DPSRINSDIQHLKDWLSKQPHLRARTDDQWL----LSFLRGCKFSLE 232
+P R+N QH++ LS + A T D W L GC + +
Sbjct: 397 EPLRVNVLFQHIQKMLSANSAVIAETGDSWFNCQKLKLPEGCGYEFQ 443
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,275
Number of Sequences: 37544
Number of extensions: 274016
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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