Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a05f
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)                 29   2.1  
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 29   2.1  
SB_18087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     28   6.3  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_53088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 29  KTSMTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDW 148
           KTS+  S+  LP +  E + + +  DPS    DI  +K+W
Sbjct: 372 KTSLKKSLLGLPFDPREVSTEGIEVDPSTFEVDIDQVKNW 411


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
 Frame = +2

Query: 59   LPPELAEKARKELNEDPSRINSDIQHL--KDWLSKQPHLRARTDDQWLLSFLRGCKFSLE 232
            LP  +A  A KE  +  + +  +   L   DW     H+  RT D+ +L FLR     +E
Sbjct: 715  LPKSMAATATKEWTDQETLLLLEGMELFKDDWNKVAEHVGTRTQDECILHFLR---LPIE 771

Query: 233  RTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATS 373
                + D+     T  P  FS +  NP+   +  L ++ V P+ A++
Sbjct: 772  DPFLE-DMKLGPLTFQPVPFS-QQGNPIMSTVAFLASV-VDPRVASA 815


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +2

Query: 260  YSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATSDSPRVSIIIPGR 409
            Y V    P  F+  P NPL  +I S+G I  LP    S      + IPGR
Sbjct: 1420 YWVPDAGPSGFTSIPENPL-GQIASIGRISNLPLVGLSQQLTPPLKIPGR 1468


>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
          Length = 1366

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 29  KTSMTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDW-LSKQPHLRARTDD 187
           KTS+  S+  L  +  E++ + +  DPSR   D++ ++ W  S +    +++DD
Sbjct: 374 KTSLKKSLLGLRFDPQEESTEGIEVDPSRFEVDVEQVRPWQKSDETESVSQSDD 427


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
 Frame = +2

Query: 20  IRWKTSMTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQWLL 199
           IR ++ +  ++  L    A   +   +ED  +   D + L+  L  +     R +DQ+++
Sbjct: 387 IRIQSVIDEAIEKLQQSAARADQDNDDEDDMKAQEDQELLEALLESKEQNNGRYEDQYII 446

Query: 200 SFLRGCKFSLERTKEK--LDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATS 373
            F R    S+    +   LD Y      A ELF+ +      DE       L +P+   S
Sbjct: 447 RFYREKLHSMPCQNQGFILDGYPKTYEQAKELFAAEEGEEAEDESPLAYDKLTMPEVVVS 506


>SB_18087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 413 DADKYNISDVMAVSLVLQKIIMMEDDN 493
           DA   + SD+M +++++  IIM+EDDN
Sbjct: 37  DASDDDNSDMMMITMMILIIIMIEDDN 63


>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
 Frame = +2

Query: 29  KTSMTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDWLSKQPHLR-ARTDDQWLLSF 205
           KTS+  S+  +P + +E + + +  DPS    D++ +  W      +      ++ L++ 
Sbjct: 303 KTSLKKSLFGIPFDPSEVSTEGIEVDPSTFEVDVEQVSRWQRLSDEIEPGSQSERALVAM 362

Query: 206 LRGCKFSLERTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATSDSPR 385
           +     SL   KE+             +   + S  L D    L     L K+A  D  +
Sbjct: 363 IVENLRSLLINKEEQAKPVGEEDLLSRIEREEVSEALEDAFKELS----LEKSAVQDDAK 418

Query: 386 VSIIIPGRYDADKYNISDVMAVS 454
           V+   P + + D   ++D + VS
Sbjct: 419 VTPSTPQQDEEDGSKLTDRIQVS 441


>SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 712

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 191 WLLSFLRGCKFSLERTKEKLDLYYSVRTTAPELF 292
           W+ SF     + L+  KEK DL+Y + + A   F
Sbjct: 113 WITSFSWDEVYGLDNCKEKFDLFYQILSDAINQF 146


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 71   LAEKARKELNEDPSR---INSDIQHLKDWLSKQPHLRARTDDQWLLSFLRGCKFSLERTK 241
            L E  RK+L  + +    +N++ + +   L+K P+    T    LL  L      LE  +
Sbjct: 804  LGEDIRKQLPRESAEFDDVNANWKIIMQRLNKDPNALRGTHYPGLLETLNDMNTKLEEIQ 863

Query: 242  EKLDLYYSVR 271
            + LD+Y   +
Sbjct: 864  KSLDMYLETK 873


>SB_53088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 29  KTSMTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDW 148
           KTS+  S+  +P +  E + + +  DPS    D++ +  W
Sbjct: 94  KTSLKKSLLGIPFDPGEVSTEGIEVDPSTFEVDVEQVSRW 133


>SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 191 WLLSFLRGCKFSLERTKEKLDLYYSVRTTAPELF 292
           W+ SF     + L+  KEK DL+Y + + A   F
Sbjct: 154 WITSFSWDEVYCLDNCKEKFDLFYQILSDAINQF 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,399
Number of Sequences: 59808
Number of extensions: 333981
Number of successful extensions: 804
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)