Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a05f
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z80220-6|CAB02305.1|  282|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.3  
AF098999-2|AAC68728.3|  369|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical
           protein F59A2.4a protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 258 YKSNFSFVLSKLNLHPRRNDNSH*SSVLARKCGCLDNQSFKC 133
           Y++ F  + + LN   + ND +    ++   CG +D + +KC
Sbjct: 200 YEALFKEMATTLNAQIQENDEAKIGGMIINTCGWVDGEGYKC 241


>Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical
           protein B0284.1 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 194 LLSFLRGCKFSLERTKEKL-DLYYSVRT 274
           ++  +  CK SL R KEKL +L YS RT
Sbjct: 273 VVKHINSCKTSLRRIKEKLNNLKYSART 300


>Z80220-6|CAB02305.1|  282|Caenorhabditis elegans Hypothetical
           protein T08G11.2 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 233 RTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATS 373
           RT  K + +YS+RTT  + F +    P   +  SL  +++  KT+ +
Sbjct: 218 RTTTKKNRHYSIRTTCDQQFFVDCGYPNVRKHYSLSHLVMFYKTSAT 264


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 74  AEKARK-ELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQ 190
           A+K  +  L E+ SRI  DI+  KD+L +  H++   + +
Sbjct: 267 ADKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHMEKE 306


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 74  AEKARK-ELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQ 190
           A+K  +  L E+ SRI  DI+  KD+L +  H++   + +
Sbjct: 267 ADKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHMEKE 306


>AF098999-2|AAC68728.3|  369|Caenorhabditis elegans Hypothetical
           protein W04C9.5 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 31  NVDDHVCSSVTSGVSRKSPQRVK*R 105
           +VD+H  S+ T+  S  SP+RVK R
Sbjct: 65  DVDEHFASTSTTSSSENSPRRVKKR 89


>Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical
           protein F22B8.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 454 RYSHDIGNIVLISIISARYDYTDTWRIRSCSL 359
           RY  +I  I   S+++  +D T  WR  SC++
Sbjct: 180 RYRLNISEIAGFSLVAYNFDNTPRWRNISCTI 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,135
Number of Sequences: 27780
Number of extensions: 260366
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)