Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a05f
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.7  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.8  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 314 LFDEILSLGAILVLPKTATSDSPRVSI 394
           L+D++LS    LV P   TSD  RV I
Sbjct: 32  LYDDLLSNYNKLVRPVVNTSDVLRVCI 58


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 314 LFDEILSLGAILVLPKTATSDSPRVSI 394
           L+D++LS    LV P   TSD  RV I
Sbjct: 32  LYDDLLSNYNKLVRPVVNTSDVLRVCI 58


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +1

Query: 385 CQYNHTW 405
           C+Y+HTW
Sbjct: 159 CEYDHTW 165


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 369 VAVLGNTNIAP 337
           VAV GNTN+ P
Sbjct: 14  VAVFGNTNLDP 24


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 369 VAVLGNTNIAP 337
           VAV GNTN+ P
Sbjct: 15  VAVFGNTNLDP 25


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 369 VAVLGNTNIAP 337
           VAV GNTN+ P
Sbjct: 15  VAVFGNTNLDP 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,486
Number of Sequences: 438
Number of extensions: 3153
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)