Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a05f
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02920.2 68417.m00396 expressed protein                             33   0.14 
At4g02920.1 68417.m00395 expressed protein                             33   0.14 
At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong...    31   0.42 
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong...    31   0.42 
At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong...    31   0.56 
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    30   0.97 
At1g76090.1 68414.m08836 S-adenosyl-methionine-sterol-C-methyltr...    30   1.3  
At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong...    29   3.0  
At5g25470.2 68418.m03029 expressed protein                             29   3.0  
At5g25470.1 68418.m03028 expressed protein                             29   3.0  
At4g20210.1 68417.m02954 terpene synthase/cyclase family protein...    28   5.2  
At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative ...    27   6.8  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   9.0  

>At4g02920.2 68417.m00396 expressed protein
          Length = 419

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 260 YSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATSDSPRVSIIIP--GRYDADKYNI 433
           +SVR+    LFS   SNP  +++LS+ +   L + +T+   ++S +IP   R+++D +  
Sbjct: 178 FSVRSNGHVLFS-SSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQRFESDVFTP 236

Query: 434 SDVMAVSLV 460
           + + AV+++
Sbjct: 237 AKLKAVTVL 245


>At4g02920.1 68417.m00395 expressed protein
          Length = 418

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 260 YSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATSDSPRVSIIIP--GRYDADKYNI 433
           +SVR+    LFS   SNP  +++LS+ +   L + +T+   ++S +IP   R+++D +  
Sbjct: 177 FSVRSNGHVLFS-SSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQRFESDVFTP 235

Query: 434 SDVMAVSLV 460
           + + AV+++
Sbjct: 236 AKLKAVTVL 244


>At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 592

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 104 DPSRINSDIQHLKDWLSKQPHLRARTDDQWL----LSFLRGCKFSLE 232
           +P RIN+  QH++  LS +  + A T D W     L   +GC +  +
Sbjct: 392 EPLRINAMFQHIQKMLSNETAVIAETGDSWFNCQKLKLPKGCGYEFQ 438


>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
           similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
           (EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
           InterPro entry IPR000399: Pyruvate decarboxylase
          Length = 607

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 98  NEDPSRINSDIQHLKDWLSKQPHLRARTDDQWL----LSFLRGCKFSLE 232
           + +P R+N+  QH++  LS +  + A T D W     L   +GC +  +
Sbjct: 405 SREPLRVNTMFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQ 453


>At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 603

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 104 DPSRINSDIQHLKDWLSKQPHLRARTDDQWL----LSFLRGCKFSLE 232
           +P R+N+  QH++  LS +  + A T D W     L   +GC +  +
Sbjct: 403 EPLRVNAMFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQ 449


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 35   SMTMSVRALPPELAEKARKELNEDPSRINS---DIQHLKDWLSKQPHLRARTDDQWLLSF 205
            S  M +  L  ELA   RK  +E    +     D+  LK W+S+    R   +D W    
Sbjct: 1572 SSLMGIGNLVEELATVVRKLQDESSVALTGMAKDLSELKSWVSETNSARLFLEDIWSEII 1631

Query: 206  LRGCKFSL 229
            ++ C  S+
Sbjct: 1632 MKDCAISV 1639


>At1g76090.1 68414.m08836
           S-adenosyl-methionine-sterol-C-methyltransferase
           identical to
           S-adenosyl-methionine-sterol-C-methyltransferase
           GI:2246456 from [Arabidopsis thaliana]
          Length = 359

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = +2

Query: 200 SFLRGCKFSLERTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILVLPKTATSDS 379
           S L G   S E+ K+  + Y+S      E+ S +      D   +L  +  + +     S
Sbjct: 35  SDLSGGSISAEKVKDNYNQYWSFFRKPKEIESAEKVPDFVDTFYNL--VTDIYEWGWGQS 92

Query: 380 PRVSIIIPGRYDADKYNISDVMAVSLVLQK 469
              S  +PG+ D D   I + MAV L+  K
Sbjct: 93  FHFSPHVPGKSDKDATRIHEEMAVDLIKVK 122


>At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 607

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +2

Query: 89  KELNEDPS---RINSDIQHLKDWLSKQPHLRARTDDQWL----LSFLRGCKFSLE 232
           K L ++P+   R+N   QH+++ LS +  + A T D W     L    GC +  +
Sbjct: 399 KPLRDNPNESLRVNVLFQHIQNMLSSESAVLAETGDSWFNCQKLKLPEGCGYEFQ 453


>At5g25470.2 68418.m03029 expressed protein
          Length = 280

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 281 PELFSIKPSNPLFDEILSLG-AILVLPKT 364
           PEL+ + P NP F + L+ G  +L +PKT
Sbjct: 172 PELYLLNPKNPYFVKTLTKGNDVLYVPKT 200


>At5g25470.1 68418.m03028 expressed protein
          Length = 280

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 281 PELFSIKPSNPLFDEILSLG-AILVLPKT 364
           PEL+ + P NP F + L+ G  +L +PKT
Sbjct: 172 PELYLLNPKNPYFVKTLTKGNDVLYVPKT 200


>At4g20210.1 68417.m02954 terpene synthase/cyclase family protein
           (+)-delta-cadinene synthase isozyme XC14,
           Gossypiumarboreum, PIR2:S68366
          Length = 600

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +2

Query: 143 DWLSKQPHLRARTDDQWLLSFLRGCKFSLERTKEKLDLYYSVRTTAPELFSIKPSNPLFD 322
           D + KQPH       +++  F+ GC    ER        YSV+ T  E  +I  +N  F 
Sbjct: 378 DAMDKQPHYL-----KFVFKFIMGCFEEFERELASEGRSYSVKATLEEFKTIVKANFDFA 432

Query: 323 EILSLGAI 346
           ++   G +
Sbjct: 433 KLAHTGHV 440


>At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative
           similar to ceramide glucosyltransferase (GI:14718995)
           [Gossypium arboreum]; weak similarity to Ceramide
           glucosyltransferase  (Glucosylceramide synthase) (GCS)
           (UDP-glucose:N-acylsphingosine D-glucosyltransferase)
           (GLCT-1) (Swiss-Prot:Q16739) [Homo sapiens]
          Length = 519

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 336 WGQYWYYLRLQLLIL--HVSV*SYLADMMLISTIFPMSWLYL*SY 464
           +G+YW YLR Q  +L  ++S  +++ +  L +    +SW ++  Y
Sbjct: 307 FGRYWNYLRKQTFVLESYISKVNWIMNKALFAVHCYLSWGFVAPY 351


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 237  VLSKLNLHPRRNDNSH*SSVLARKCGCLDNQSF-KC*MSLLILLGSSFNSLRAFSANSGG 61
            V ++ +LH +  D+   +S L R C CL NQ F    M++L  L   F S RA +  + G
Sbjct: 2863 VATQSSLHVQERDDF--ASQLVRACSCLRNQEFVNYLMNILQQLVHVFKS-RAANVEARG 2919

Query: 60   NA 55
            ++
Sbjct: 2920 SS 2921


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,220
Number of Sequences: 28952
Number of extensions: 233292
Number of successful extensions: 564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)