Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a03r
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 354 4e-98
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 1.3
02_05_0237 + 27095817-27097433 30 2.2
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 29 2.9
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.9
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 29 3.9
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 3.9
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 5.1
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 5.1
08_02_0478 + 17621678-17623768 28 6.8
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 6.8
08_01_0346 - 3063440-3064189 28 9.0
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 9.0
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 9.0
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 28 9.0
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 9.0
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 354 bits (871), Expect = 4e-98
Identities = 175/223 (78%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Frame = -1
Query: 714 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 535
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 534 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 355
RIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 354 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 175
F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186
Query: 174 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 49
KVKIML WD +GK GP P PD + + PKDE +P T+E+
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 139 QERPEEATTRPHPGDRAQGRARAPR 65
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 77 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 184
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 202 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARA 71
A + S R G++ + P R+E + T RP PG + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 457 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 362
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 202 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAP 68
A + R+TRN G A + RP + T + + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -1
Query: 234 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 85
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = +1
Query: 184 YSLPEKHMSGSSVDVVIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETEN 363
+ L + + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 364 TIASTTYSETSDKLVS 411
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 192 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 49
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 276 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 181
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = -1
Query: 387 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 208
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 207 HVLLRQGVLGIKVKI 163
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 423 AESLRYKLIGGLAVRRACYGVLR 355
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 92 SVTRMWSGCGFFGPFLPCWSH 154
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 27.9 bits (59), Expect = 9.0
Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = -1
Query: 684 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 505
GV+ E+ + +++AE+ V + + ++ ++ + +RE+ +++
Sbjct: 325 GVYLGEIARLVFQKMAEES-DIFGTAVDGLSTPFVLSTPNLAAIREDDSPDLREVGKILE 383
Query: 504 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG- 328
+ +P+ V L K+ R I + A R A ++ + + G G
Sbjct: 384 EHLKLPD--VPLKTRKLVARVSDIITRR-----------AARLAAAAIVAILQKIGCDGT 430
Query: 327 -CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 160
C +RG R +++ ++G + +Y+N A +L + + +++M
Sbjct: 431 LCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVM 487
>04_04_1079 - 30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -3
Query: 211 QTCASQARSTRNQGQNHVAVGPARQERPEEATTR-PHPGDRAQGRARAPRADQ 56
Q C + +HV P ++ RP + +R P R R RA R +Q
Sbjct: 861 QPCNDKLEENEKADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQ 913
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 129 PKKPQPDHILVTEPKDEPVPLEPTS 55
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,605,491
Number of Sequences: 37544
Number of extensions: 456948
Number of successful extensions: 1530
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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