Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a03r
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       396   e-111
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             36   0.046
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)                  30   1.7  
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)                 30   2.3  
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   4.0  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   4.0  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   4.0  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           29   4.0  
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)                 29   5.2  
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)                 28   6.9  
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 28   6.9  
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 28   9.1  
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  396 bits (976), Expect = e-111
 Identities = 190/221 (85%), Positives = 202/221 (91%)
 Frame = -1

Query: 714 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 535
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 534 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 355
           RIRELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124

Query: 354 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 175
           FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184

Query: 174 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 52
           KVKIMLPWD  GK GPKKP PD + + EPKDE VP +PTSE
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = -3

Query: 160 VAVGPARQERPEEATTRPHPGDRAQGRARA 71
           VA GPAR   PE   TRPHPG    GR  A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136


>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
          Length = 301

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -3

Query: 148 PARQERPEEATTRPHPGDRAQGRARA 71
           PAR   PE   TRPHPG    GR  A
Sbjct: 42  PARVTSPEPPATRPHPGRVEAGRRLA 67


>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
          Length = 1115

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -3

Query: 148 PARQERPEEATTRPHPGDRAQGRARA 71
           PAR   PE   TRPHPG    GR  A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = -1

Query: 660 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 499
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 498 FNIPEQSVELYA 463
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = -1

Query: 630  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 451
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 450  TRGLCAIAQA 421
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 310 WQAAWSTCQINEVCRWTHDPLW 245
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 316 CIWQAAWSTCQINEVCRWTHDPLWRP 239
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 451 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 329
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 187 STRNQGQNHVAVGPARQERPEEATTRP 107
           +++N  + H  + PA+QE+PE  + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188


>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
          Length = 1851

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -3

Query: 157  AVGPARQERPEEATTRPHPGDRAQGRA 77
            A   AR   PE   TRPHPG    GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523


>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
          Length = 988

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 190 RSTRNQGQNHVAVGPA--RQERPEEATTRPHPGDRAQGRARA 71
           +  R   +  VA  PA  R   PE   TRPHPG    GR  A
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842


>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 519

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 50  TSLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCW 148
           +S+  S G GSSLGS+ R W       P    W
Sbjct: 214 SSIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246


>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 647

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 324 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG-VLGIKVKIMLPWD 148
           E + S   +  R++ MK + GL   +   CN+    +T  VL + G +L  K +I   W 
Sbjct: 236 EEIASEAEKAARSQHMKTLYGL---TKKLCNERPRHSTA-VLDKDGNLLSKKEEIQRRWT 291

Query: 147 QQGKNGPKKPQPDHILVTEPKDE 79
           +  +   K+ QPD+ +  EP+DE
Sbjct: 292 EHFREVLKREQPDNPI--EPEDE 312


>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 148 PARQERPEEATTRPHPGDRAQGRARA 71
           P R   PE   TRPHPG    GR  A
Sbjct: 185 PPRITSPEPPATRPHPGRVEAGRRLA 210


>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -1

Query: 327 CEVVVSGKLRGQRAKSMKFVDGLMIHSG--DPCNDYVNTATRHVLLRQGVLGIKVKIMLP 154
           CE + + KL+   +K+   + G   +    D C+ ++N      +  Q  LGIK+   L 
Sbjct: 136 CEWLTANKLQFHPSKTKSMIIGSSYNLAKIDQCSVFINNTEVTRVKSQKCLGIKIDDKLN 195

Query: 153 WDQQGKNGPKKPQP 112
           W        KK  P
Sbjct: 196 WGNHIDKFCKKAGP 209


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 180  GIKVKIMLPWDQQGKNGPKKPQ-PDHILVTEPKDEPVPLEPTSEVRS 43
            G+K+K+ML  D+ G + P  P+ P       P +   P E  S  +S
Sbjct: 1628 GLKIKLMLKKDRSGGSSPVSPRSPSPCEPRLPLESRSPFESNSSFQS 1674


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,236,457
Number of Sequences: 59808
Number of extensions: 510975
Number of successful extensions: 1658
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)