Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a03f
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 322 1e-88
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.1
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 3.7
08_02_0478 + 17621678-17623768 28 5.0
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 5.0
08_01_0346 - 3063440-3064189 28 6.5
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 6.5
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 322 bits (791), Expect = 1e-88
Identities = 159/186 (85%), Positives = 169/186 (90%)
Frame = +3
Query: 42 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 221
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 222 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 401
RIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 402 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 581
F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186
Query: 582 KVKIML 599
KVKIML
Sbjct: 187 KVKIML 192
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 299 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 394
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = -1
Query: 572 YSLPEKHMSGSSVDVVIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETEN 393
+ L + + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 392 TIASTTYSETSDKLVS 345
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 480 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 575
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = +3
Query: 369 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 548
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 549 HVLLRQGVLGIKVKI 593
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 333 AESLRYKLIGGLAVRRACYGVLR 401
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 27.9 bits (59), Expect = 6.5
Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = +3
Query: 72 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 251
GV+ E+ + +++AE+ V + + ++ ++ + +RE+ +++
Sbjct: 325 GVYLGEIARLVFQKMAEES-DIFGTAVDGLSTPFVLSTPNLAAIREDDSPDLREVGKILE 383
Query: 252 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG- 428
+ +P+ V L K+ R I + A R A ++ + + G G
Sbjct: 384 EHLKLPD--VPLKTRKLVARVSDIITRR-----------AARLAAAAIVAILQKIGCDGT 430
Query: 429 -CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 596
C +RG R +++ ++G + +Y+N A +L + + +++M
Sbjct: 431 LCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVM 487
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,010
Number of Sequences: 37544
Number of extensions: 365106
Number of successful extensions: 971
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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