Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a03f
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       344   3e-95
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   2.9  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   2.9  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   2.9  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)                     27   8.8  
SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)             27   8.8  
SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)                    27   8.8  
SB_15903| Best HMM Match : Gate (HMM E-Value=6)                        27   8.8  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  344 bits (846), Expect = 3e-95
 Identities = 168/187 (89%), Positives = 177/187 (94%)
 Frame = +3

Query: 42  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 221
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 222 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 401
           RIRELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124

Query: 402 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 581
           FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184

Query: 582 KVKIMLP 602
           KVKIMLP
Sbjct: 185 KVKIMLP 191


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +3

Query: 96  EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 257
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 258 FNIPEQSVELYA 293
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 126  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 305
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 306  TRGLCAIAQA 335
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 446 WQAAWSTCQINEVCRWTHDPLW 511
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 440 CIWQAAWSTCQINEVCRWTHDPLWRP 517
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 305 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 427
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
          Length = 339

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 459 GQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 593
           G++      ++   IH G P  DY     +  L R+GV G+ V I
Sbjct: 25  GKKTAGRLRLERTQIHGGSPVIDYKVEVDQVKLAREGVTGVPVVI 69


>SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
          Length = 611

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 302 GYSWSLRYRPGRISKIQAYRRSRCTSCLLWCSP 400
           GY+++LRY+P  ++     R++R  + +LW +P
Sbjct: 363 GYNYTLRYKPNTVTN----RKTRKRNNILWYNP 391


>SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 240 SVVQKRFNIPEQSVELYAEKVATRGLCAI 326
           +++ + F  P    E +A K+ TRGLC I
Sbjct: 402 NILHRHFGYPVTFQEFFAIKLITRGLCRI 430


>SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)
          Length = 120

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +3

Query: 87  ELNEFLTRELAE-DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 263
           E+ E + + +AE +G SG EV+   ++ +  ++  +TQ    E  ++ +EL  + +KR N
Sbjct: 20  EVIEVVNKLIAEGEGESGNEVKENKVKKKPSVIK-QTQ----EDEKKTKELEELKEKRIN 74

Query: 264 IPE 272
           +P+
Sbjct: 75  LPQ 77


>SB_15903| Best HMM Match : Gate (HMM E-Value=6)
          Length = 444

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 302 GYSWSLRYRPGRISKIQAYRRSRCTSCLLW 391
           G +W +R  P  + + +A+R +R  SC LW
Sbjct: 88  GKNWKVRASPAWVRRYRAFRHAR--SCSLW 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,624,744
Number of Sequences: 59808
Number of extensions: 415694
Number of successful extensions: 1192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)