Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a03f
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 318 1e-87
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 315 1e-86
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 315 1e-86
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 32 0.34
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 32 0.34
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 31 0.59
At2g25150.1 68415.m03008 transferase family protein similar to 1... 31 0.59
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel... 30 1.0
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 28 4.1
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 5.5
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)... 27 7.2
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 27 7.2
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 7.2
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 27 9.6
At1g56240.1 68414.m06465 SKP1 interacting partner 3-related cont... 27 9.6
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 318 bits (782), Expect = 1e-87
Identities = 154/186 (82%), Positives = 168/186 (90%)
Frame = +3
Query: 42 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 221
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 222 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 401
RIRELTS+VQKRF P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 402 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 581
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLG+
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGL 184
Query: 582 KVKIML 599
KVKIML
Sbjct: 185 KVKIML 190
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 315 bits (774), Expect = 1e-86
Identities = 153/186 (82%), Positives = 167/186 (89%)
Frame = +3
Query: 42 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 221
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 222 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 401
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 402 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 581
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGI 184
Query: 582 KVKIML 599
KVK+ML
Sbjct: 185 KVKVML 190
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 315 bits (774), Expect = 1e-86
Identities = 154/186 (82%), Positives = 166/186 (89%)
Frame = +3
Query: 42 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 221
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 222 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 401
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 402 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 581
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGI 184
Query: 582 KVKIML 599
KVKIML
Sbjct: 185 KVKIML 190
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 239 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 150
S+L + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 239 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 150
S+L + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 31.1 bits (67), Expect = 0.59
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 338 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 195
FG + TSS F FY L W + +L YG L +AS LS T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 170 LRADGSDPDFHAGVAVLGQLPSEELIEFRLENSISNK 60
L+ SDP GV V+ +LP + ++EF+ E + K
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKK 454
>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
putative (CNGC17) similar to cyclic nucleotide and
calmodulin-regulated ion channel cngc5 GI:4581205 from
[Arabidopsis thaliana]
Length = 720
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 338 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 198
FG + SS F FY L W ++ L YG L+ + F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -1
Query: 398 ENTIASTTYSETSDKLVS*RFGLGDSAKTT---SSHLFSIQFYRLLWNVESLLYYGSQLT 228
+N ++ + + + +FG+ A TT ++ S Y L W + +L YG +T
Sbjct: 278 QNVTQVLSHCDATSSTTNFKFGMFAEAFTTQVATTDFVSKYLYCLWWGLRNLSSYGQNIT 337
Query: 227 DSASFLSEHTLC 192
S +L E C
Sbjct: 338 TSV-YLGETLFC 348
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 417 GARGCEVVVSGKLRGQRAKSMKFVDG 494
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 319
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 323 SAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL-CPGGHNNDLRADGSD 150
SA S H+ + ++ WN S + G+ + S S T GG +D + GSD
Sbjct: 243 SAAFVSDHINDGENFKAGWNFSSSMLAGTSSSSSTPLNSSSTFYVNGGSEDDRESFGSD 301
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 239 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 150
++L + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 48 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 224
K RK G + KA + E+ ++ GYSG P+ + ++ +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 359 RRSRCTSCLLWCSPFHHGIWRPWL*SCCIWQ-AAWS--TCQINEVCRWTHDP 505
R R SC +H + W ++ ++WS +C++ EVCR T DP
Sbjct: 161 RARRMLSCKDCGKKYHKNCLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDP 212
>At1g56240.1 68414.m06465 SKP1 interacting partner 3-related
contains similarity to SKP1 interacting partner 3
GI:10716951 from [Arabidopsis thaliana]
Length = 284
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 18 VAIMAVNNISKKR--KFVGDGVFKAELNEFLTRELAED--GYSGVEVRVTPIRSEIII 179
+ + AV K+R K DG + EL EF+TRE +D S EV+ ++ I+I
Sbjct: 216 MTVEAVGGDGKRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVI 273
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,569,765
Number of Sequences: 28952
Number of extensions: 281487
Number of successful extensions: 737
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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