Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a02r
         (720 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54U32 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_A6PA56 Cluster: Purine phosphorylase, family 1; n=1; Sh...    33   9.4  

>UniRef50_Q54U32 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 433

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 477 DSTALIHYV-T*RYLHTINFIKQFLSLSIFSII 572
           D   +I+Y+ T +YLHTINF K FL+ S   +I
Sbjct: 359 DMDIIIYYISTSKYLHTINFAKNFLNTSSLHLI 391


>UniRef50_A6PA56 Cluster: Purine phosphorylase, family 1; n=1;
            Shewanella sediminis HAW-EB3|Rep: Purine phosphorylase,
            family 1 - Shewanella sediminis HAW-EB3
          Length = 1050

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 458  HFVTPLRLDCTYTLRNLTLFTYNKFYQAIFKS*YFLNY---QFEKFVNCLYIVKSTVFHS 628
            +F+  ++   T T     L  Y +F+   F +    N    +FEKF +C++  +S V  S
Sbjct: 856  NFLLQIKGSTTNTTSIDGLHIYGEFHTLDFSNITITNSYFSEFEKFEDCIFPSESKVVFS 915

Query: 629  HCQFQKXSFSFTTQYK 676
            +C+F K +       K
Sbjct: 916  YCEFNKITLKKANNIK 931


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,264,117
Number of Sequences: 1657284
Number of extensions: 8332705
Number of successful extensions: 16398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16392
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)