Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a02r
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.7  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   4.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.2  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 185 YLFQLIYS*HDYNVSTEDYKLERATEFS 268
           + FQ ++  ++YN+ TE  K ERA++FS
Sbjct: 56  FSFQNVHLENEYNILTEIAKDERASKFS 83


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 480 STALIHYVT*RYLHTINFIKQFLSLSIFSIINLKNL 587
           STA+IH+    Y+         LSL+ F+I+  K L
Sbjct: 82  STAIIHWAAKSYVSEATLKGNVLSLNTFNILGKKRL 117


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 252 VPQNFRILFSNV*IKILNES*IKGCDESLQG 344
           +P+   +++SN  +   ++S IK C+E+LQG
Sbjct: 225 LPEESYVMYSNKLVVPPSDSIIKKCEETLQG 255


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 449  DALRHAFVNFHFIIVLIRLENCSIFVTQYFFVDITP 342
            D  R  F N  F  + I L    + +  YFF+D  P
Sbjct: 1587 DTSRAHFTNMFFTEIFIPLMLVPLTLVSYFFIDSQP 1622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,621
Number of Sequences: 5004
Number of extensions: 40521
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)