Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a02r
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.1  
At1g13870.1 68414.m01628 expressed protein similar to KTI12 prot...    28   7.2  

>At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to ACC oxidase, Lycopersicon
           esculentum [SP|P05116], gibberellin 3B-hydroxylase,
           Latuca sativa [gi:4164145]; contains Pfam domain
           PF03171, 2OG-Fe(II) oxygenase superfamily
          Length = 352

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 434 RDAERRSV-HFVTPLRLDCTYTLRNLTLFTYNKF 532
           R  ER SV +FV P R DC     N  LFTY+ F
Sbjct: 292 RKTERHSVCYFVFPKR-DCVIKSSNYKLFTYSDF 324


>At1g13870.1 68414.m01628 expressed protein similar to KTI12 protein
           (SP:P34253) {Saccharomyces cerevisiae}; contains Prosite
           PS00070: Aldehyde dehydrogenases cysteine active site
          Length = 302

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 711 CVSRLAGLRHVTLYCVVNE 655
           C++R AG+R+  +YC V+E
Sbjct: 94  CIARAAGIRYCVVYCDVDE 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,187,383
Number of Sequences: 28952
Number of extensions: 174506
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)