Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a02f
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   0.79 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.0  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   5.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   5.6  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +2

Query: 248 THKLRTHSLNEENVSEKVE--EHDSGTESDDEADRADSGDLNT 370
           THK  +HS++  N SEK    +H          D+     L T
Sbjct: 247 THKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDKNPENTLGT 289


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 266 HSLNEENVSEKV--EEHDSGTESDDEAD 343
           H+L+  +  EK+  EEH+S  + DD+ D
Sbjct: 268 HTLSMNHKYEKIDKEEHESMDDDDDDDD 295


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
          protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 83 ILNLQ*HIRIQVDERP 36
          + NL+ H+R+   ERP
Sbjct: 50 VANLRRHLRVHTGERP 65


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 83  ILNLQ*HIRIQVDERP 36
           + NL+ H+R+   ERP
Sbjct: 203 VANLRRHLRVHTGERP 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,469
Number of Sequences: 336
Number of extensions: 2366
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)