Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a02f
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    29   0.63 
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    29   0.63 
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    28   1.1  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    28   1.1  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   1.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   2.5  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    25   7.7  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.7  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 236 LKFLTHKLRTHSLNEENVS--EKVEEHDSGTESDDEADRADSGDLNTDVIMK 385
           LK L + L   S   ENVS  E + ++ +GT  +D +D  DSG L  D I K
Sbjct: 123 LKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSG-LGHDDIAK 173


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 302 EEHDSGTESDDEADRADSGDLNTDVIMKWND 394
           E   SGTESD E D +DSG   +DV M  N+
Sbjct: 281 ELESSGTESDLERDNSDSGSA-SDVNMNENE 310


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 263 THSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGA 400
           TH+ NE   SE  E +D+ +ESD   D   S  LN   + K  + A
Sbjct: 4   THNPNETEASEDAE-NDTQSESDLSFDHGSSEKLNRASLPKTQNSA 48


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 278 EENVSEKVEEHDSGTESDDEADRADSGD 361
           EE   E  EE D   E D+E +  D GD
Sbjct: 180 EEEADEMEEEFDEEGEGDEEEEEEDDGD 207


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +2

Query: 311 DSGTESDDEADRADSGDLNTDVIMKWNDGADISMTGEACACGPTPARLLPEPEPDHLYDH 490
           D G+    E DR D G   T V  +  D   + +  ++      P+ LL           
Sbjct: 485 DKGSSLAAEDDRNDEGSTITGVNRELQDEGRLEIDAKSSKTNTPPSPLLVGTPSKESLKE 544

Query: 491 HSSEEELEVI 520
            SS++EL V+
Sbjct: 545 ASSDDELPVL 554


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 359 DLNTDVIMKWNDGADISMTGEAC 427
           D+N+D I  W+D  D    GE C
Sbjct: 333 DINSDFIDDWDDSCDGCTPGELC 355


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 278  EENVSEKVEEHDSGTESDDEADRAD 352
            EENV E  E  + G +SD+E ++ +
Sbjct: 4166 EENVQENEESTEDGVKSDEELEQGE 4190


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 30  DGRPLVNLYADVLLKV*NGLGTFP---IGARVSITNRLILFNNTRYLCRANATVGRASEC 200
           D R +V+  AD +L   + L  FP   I   +SITN+ +  +N+ +      T+G   +C
Sbjct: 555 DFRGIVHGLADAVLNWQSILSFFPALRIMRFLSITNKSLSSDNSAFTENDIPTLGAYWQC 614

Query: 201 RWTI 212
            W I
Sbjct: 615 IWNI 618


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 290 SEKVEEHDSGTESDDEADRADSGDLNTD 373
           SE V+E  S TE++DE+   D  D NTD
Sbjct: 341 SEGVDEGTS-TEANDESSEDDDEDNNTD 367


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = -1

Query: 234 IIEPRLSGSSTDIHSRGPRSRLHGTDI-----EYY*IRSDGSLLTLSHLWETFQDHFK 76
           +++P LS      H+    S +H  DI     EYY       +  L H+++  +D FK
Sbjct: 89  VLQPDLSEQEFQAHTNWV-SEMHQMDIASQEDEYYDTSDSNYMFGLKHVYDFGEDSFK 145


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 275 NEENVSEKVEEHDSGTESDDEADRADSGDLNTDVI 379
           + +N+ +  EE+D G E+ DEA+   +  L + V+
Sbjct: 794 HSDNIDKGSEENDLGKEAVDEANNNQNDVLESVVV 828


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,096
Number of Sequences: 5004
Number of extensions: 39647
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)