Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a02f
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 33 0.21
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 32 0.37
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 30 1.1
09_03_0207 - 13486694-13487047 30 1.5
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 29 2.0
01_05_0760 - 24977608-24978708 29 2.0
08_01_0112 - 885965-886010,887084-887145,887908-887976,888076-88... 29 2.6
12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831 29 3.4
05_03_0009 - 7342164-7342709,7343036-7343179,7343324-7343500 29 3.4
05_01_0146 - 953957-956278,956468-956786,957185-957213 29 3.4
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 29 3.4
01_05_0397 + 21753095-21753814 29 3.4
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 28 4.5
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 28 6.0
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 6.0
12_01_0176 - 1308813-1309640 27 7.9
05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317 27 7.9
03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405 27 7.9
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 27 7.9
>08_02_1323 - 26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +2
Query: 302 EEHDSGTESDDEADRADSGDLNTDVIMKWNDGADISMTGEACACGPTPARLLPEPEPDHL 481
++H++ +DD+ D + N+ I+ DGA A P P + P D
Sbjct: 884 QKHEATVSTDDDLKGDDPSESNSPQII---DGAGDKEQDAETAADPPPGKTDAPPSTDDA 940
Query: 482 YDHHSSEEELEVINGV 529
+ EEELE + V
Sbjct: 941 EETKPKEEELETVGTV 956
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = +2
Query: 263 THSLNEENVSEKVEEHDSGTESDDEADRAD 352
+ S ++E +SEK+++ D G++ DD++D+ D
Sbjct: 578 SESDDDEELSEKLDDSDEGSDQDDDSDQDD 607
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 260 RTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGADISMTGE 421
R H + +++VS EE D E DD+ + D+ DV + ++ DI GE
Sbjct: 1506 RPHGMIDDDVS---EEEDEDVEGDDDGEEDDADRAVDDVDAEMDEDDDIGDDGE 1556
>09_03_0207 - 13486694-13487047
Length = 117
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 554 RGRPVRSWAPR*SPRVPLQTSGGRRDD-RALVQAKVW 447
R R R W+P + + L T GGRR D R + A +W
Sbjct: 26 RSRGRRRWSPGLAADLDLATEGGRRGDRRGIAGAAMW 62
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 236 LKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTD 373
L + KL+ ++ EN+ ++ EH E DD D+ D + + D
Sbjct: 152 LNAMKQKLKKNNKQYENLIQECREHPERFEDDDVEDKDDDDETDDD 197
>01_05_0760 - 24977608-24978708
Length = 366
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 548 RPVRSWAPR*SPRVPLQTSGGRRDDRALVQAKVWPESARMHTPPQSY 408
R V S AP L T GR+ RA +A+ P ++R H P S+
Sbjct: 118 RSVHSDAPLLPYSSSLPTKDGRKQSRARRKARSSPSTSRRHCPSSSW 164
>08_01_0112 -
885965-886010,887084-887145,887908-887976,888076-888123,
888205-888264,888392-888504,888578-888650,888725-888769,
889382-889527,890782-890842,891913-892056,892164-892400
Length = 367
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 287 VSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGADISMTGEACACGPTPARLLPEP 466
V E +H + + +A + DL D++ K N A+ + A PT P P
Sbjct: 3 VVETSADHAAPPPPEGDAGEREMRDLE-DLLSKLNPMAEEFVPPSLAAASPTAYAYYPTP 61
Query: 467 EPDHLY 484
P H++
Sbjct: 62 TPSHVF 67
>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
Length = 418
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 240 LSIIEPRLSGSSTDIHSRGPRSRLHGTDIEYY*IRSDGSLLTLSHL 103
L+I + S ++HS RSR + T ++YY I G L+ +S++
Sbjct: 100 LAIFTAMVIPSGDNLHSNSSRSRSNATAMDYYYIH--GDLMVMSNM 143
>05_03_0009 - 7342164-7342709,7343036-7343179,7343324-7343500
Length = 288
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 290 SEKVEEHDSGTESDDEADRADSG 358
SE+VEEH G +D D DSG
Sbjct: 19 SEEVEEHVEGASEEDNGDGDDSG 41
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +2
Query: 269 SLNEENVSEKVEEHDSGTESD-------DEADRADSGDLNTDVIMKWNDGADISMTGEAC 427
S++EE VE D+ +E+D D +R+ +GD+N + K + C
Sbjct: 750 SVHEEVTDSVVENGDAESENDKNPKLELDVLNRSSNGDMNHEE-EKGETKVEQEEVKTEC 808
Query: 428 ACGPTPARLLPEPEPDHLYDHHSSEEELE 514
+ + +P PD + SS++ELE
Sbjct: 809 TTQESNKIIEKQPHPDRKQETVSSKDELE 837
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 520 DHLEFLFRRVVVVEMIGLWFRQ 455
DH + R+ VV+ IGLW++Q
Sbjct: 661 DHCNHMVRQAVVLTKIGLWYKQ 682
>01_05_0397 + 21753095-21753814
Length = 239
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +2
Query: 305 EHDS-GTESDDEADRADSGDLNTDVIMKWN-DGADISMTGEACACGPTPARLLPEPEPDH 478
EHD + D +DS D+ + V+ + + G C P ARL P PDH
Sbjct: 16 EHDHIAIDIGDSTAGSDSDDVPSCVVCTEPIEWVAVGPCGHRVVCSPCAARLRSGPNPDH 75
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 245 LTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADS 355
L H + H N +EK HD E D RADS
Sbjct: 124 LNHAEKDHEDKGVNQAEKEPSHDGAIEKTDGVTRADS 160
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 206 DDPESRGSIMLKFLTHKLRTHSLN---EENVSEKVEEHDSGTESDDEADRADS 355
+DPE R + L L K R SLN E++ E+++E S + +E ++ D+
Sbjct: 238 EDPEERQMVSLNRLFEKHRDVSLNRLLEKHRDEEMQESCSTDKEGEEDEKIDT 290
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 236 LKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGADISMT 415
L + KL+ ++ EN+ ++ EH E DD D+ D + + D I+M+
Sbjct: 468 LNAMKQKLKKNNKQYENLIQECREHPERFEDDDVEDKDDDDETEDEDSDAEEDPEKIAMS 527
>12_01_0176 - 1308813-1309640
Length = 275
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 320 TESDDEADRADSG-DLNTDVIMKWNDGADISMTGEACACGPTPA 448
T D A RAD+G + T + + +S +GE A GP PA
Sbjct: 137 TPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGERLAAGPWPA 180
>05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317
Length = 507
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 233 MLKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWND 394
++K L H +S +EE VSE E ++S +D+E+ L ++ K ND
Sbjct: 312 LVKKLYHIFLANSGDEETVSEARESNNSEMHNDEESKPPKPAGLKKSLVEK-ND 364
>03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405
Length = 410
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +2
Query: 170 KRDRGPRE*MSVDDPESRGSIMLKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRA 349
K D GP ++ + GS+ K + LNEE EK E SDD
Sbjct: 281 KVDLGPWILQEINYQKEEGSLSSYEWFRKKLEYELNEEATLEKSE-----WNSDD----- 330
Query: 350 DSGDLNTDVIMKWNDGADI 406
D+ N D+I ++N+ DI
Sbjct: 331 DNAPCNEDIIGRYNEAIDI 349
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 266 HSLNEENVSEKV--EEHDSGTESDDEADRADSGDLNTDVIMKWNDGA 400
HS + N ++++ +EH + DDE+ R + + + +++ DGA
Sbjct: 692 HSSEDHNTADEIASDEHQMQSRIDDESCRNEITECSDEIVEVGGDGA 738
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,516,687
Number of Sequences: 37544
Number of extensions: 326995
Number of successful extensions: 1304
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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