Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a02f
(567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25100.1 68416.m03135 cell division control protein-related c... 34 0.058
At3g56720.1 68416.m06309 expressed protein 32 0.23
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 32 0.23
At2g41190.1 68415.m05087 amino acid transporter family protein l... 31 0.41
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 31 0.71
At3g02810.1 68416.m00273 protein kinase family protein contains ... 30 1.2
At2g36740.1 68415.m04507 YL1 nuclear family protein similar to Y... 30 1.2
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 29 1.6
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 29 2.2
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 29 2.9
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 28 3.8
At3g01810.1 68416.m00123 expressed protein 28 3.8
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 28 5.0
At4g01895.1 68417.m00248 systemic acquired resistance (SAR) regu... 28 5.0
At3g43150.1 68416.m04546 hypothetical protein 28 5.0
At1g13120.1 68414.m01521 expressed protein contains Prosite PS00... 28 5.0
At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07... 28 5.0
At5g52830.1 68418.m06558 WRKY family transcription factor 27 6.6
At5g17160.1 68418.m02010 expressed protein 27 6.6
At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger) fa... 27 6.6
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 27 6.6
At1g11770.1 68414.m01351 FAD-binding domain-containing protein s... 27 6.6
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 8.7
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near... 27 8.7
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 27 8.7
>At3g25100.1 68416.m03135 cell division control protein-related
contains weak similarity to cell division control
protein 45 homolog (Suppressor of nda4 protein)
(Swiss-Prot:O74113) [Schizosaccharomyces pombe]
Length = 596
Score = 34.3 bits (75), Expect = 0.058
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 197 MSVDDPESRGSIMLKFLTHKLRTHS--LNEENVSEKVEEHDSGTESDDEADRADSGD 361
+ DD E +G + F KL S L E+ E+ +E + E D+E D D GD
Sbjct: 135 LHTDDDERQGDLAYDFDVLKLANESFQLRVEDAGEESDEEEEDEEEDEEDDDDDDGD 191
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 74 GLKWSWNVSH-RCESVNNEPSDLIQ*YSISVPCKRDRGPRE*MSVDDPESRGSIMLKFLT 250
G +W + H R E +E ++ + + V RDR + ++ +D ++ + F++
Sbjct: 186 GSRWGFGDRHSRVERKEHEDPEISKEKEVHVKSSRDRSDGKCLATEDRDTHSKKLKGFIS 245
Query: 251 HKLRTHSLNEE 283
K T + NEE
Sbjct: 246 DKFTTGNTNEE 256
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/86 (19%), Positives = 39/86 (45%)
Frame = +2
Query: 218 SRGSIMLKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDG 397
S ++ F T + ++ ++ V++ S S +++ R G LNTD + +DG
Sbjct: 224 SASDLLQTFSTPESEHQHISRVQSTDSVQQLVSNGSSTEQSGRVSDGSLNTDEEERESDG 283
Query: 398 ADISMTGEACACGPTPARLLPEPEPD 475
++++ + + G + P+ D
Sbjct: 284 SEVTGSATVMSSGHSSPSSFPDGVDD 309
>At2g41190.1 68415.m05087 amino acid transporter family protein low
similarity to vesicular GABA transporter [Rattus
norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 536
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 269 SLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWND 394
+ ++ +E +E++ S E+D E D++D GDL D + + +D
Sbjct: 15 TFEDDEDNEDLEDNSSKYENDSETDQSDLGDLPGDAVDRDDD 56
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 30.7 bits (66), Expect = 0.71
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 281 ENVSEKVEEHDSGTESDDEADRADS 355
E +SEK+ HDS + S+ E ++ DS
Sbjct: 17 EKISEKIHHHDSSSSSESEYEKPDS 41
>At3g02810.1 68416.m00273 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 558
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = +2
Query: 185 PRE*MSVDDPESRGSIMLKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEAD 343
P E + DD S S L + + S NE +K EE DS ESDDE+D
Sbjct: 380 PPELATEDDKSSTSSGEESSLESEKESVSKNE--YKKKHEEEDSSMESDDESD 430
>At2g36740.1 68415.m04507 YL1 nuclear family protein similar to YL-1
protein (Transcription factor-like 1)
(Swiss-Prot:Q15906) [Homo sapiens]
Length = 379
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 218 SRGSIMLKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDE-ADRADSGDLNTDVIM 382
+RG M K L ++ + K EEHD E++ E AD DS D N DV M
Sbjct: 19 TRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDS-DFNDDVFM 73
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 29.5 bits (63), Expect = 1.6
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +2
Query: 269 SLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGADISM-TGEACACGPTP 445
+L+EEN + +E+ D DD+ D D D+N V ++ D+ + T E
Sbjct: 303 NLDEENGDDDIEDED----DDDDDDDDDDDDVNEMVAWSNDEDDDLGLQTKEPIRSKNEL 358
Query: 446 ARLLPEPEPDHLYDHHSSEEELEVINGVPSS 538
L P P D + H + + V+ V S+
Sbjct: 359 KELPPVPPVDVTLEPHHATLPVGVVLSVMSA 389
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 263 THSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDV----IMKWN-DGADISMTGEAC 427
+ S +EE + E VE+ SDD R SGDL+ +V + W ++ G C
Sbjct: 39 SQSESEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLC 98
Query: 428 AC 433
C
Sbjct: 99 FC 100
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 275 NEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGAD 403
NE++V+E VEEH E+++E D GD ++ AD
Sbjct: 872 NEDDVAEHVEEHHEEKEAEEEEGIVD-GDSTDGAVLVNGSEAD 913
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 28.3 bits (60), Expect = 3.8
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +2
Query: 287 VSEKVEEHDSGTESDDEADRADSG-DLNTDVIMKWNDGADISMTGEACACGPTPARLLPE 463
V EK + S ++ D +D T V+ K + S G + PTPA+ P
Sbjct: 172 VLEKAKIESSSSDDDSSSDEETVPMKKQTAVLEKAKAESSSSDDGSSSDEEPTPAKKEPI 231
Query: 464 PEPDHLYDHHSSEEELEVINGVPSS 538
D SS+EE V+ P++
Sbjct: 232 VVKKDSSDESSSDEETPVVKKKPTT 256
>At3g01810.1 68416.m00123 expressed protein
Length = 921
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +2
Query: 443 PARLLPEPEPDHLYDHHSSEEELE--VINGVPSSAPA---CP 553
P P+P PD + SEEE E +I P +AP+ CP
Sbjct: 799 PDEFCPDPVPDAVLKSLESEEEAEKSIITSYPCTAPSPVYCP 840
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 206 DDPESR---GSIMLKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTD 373
DD ES+ GS+ + + T +E V + VEE D GT+ DDE + G ++ D
Sbjct: 152 DDGESKIENGSVDVD--VKQASTDGESESKVKD-VEEEDVGTKKDDEGESELGGKVDVD 207
>At4g01895.1 68417.m00248 systemic acquired resistance (SAR)
regulator protein NIMIN-1-related contains similarity to
NIMIN-1 protein GI:12057154 from [Arabidopsis thaliana]
Length = 140
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = +2
Query: 272 LNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGADISM 412
++ +N E+ +E + E D+E + D G+ + +M+ ++G D+++
Sbjct: 93 ISTKNQEEEKQEEEE-EEDDEEEEDDDEGEEEVEKVMRKDNGLDLNL 138
>At3g43150.1 68416.m04546 hypothetical protein
Length = 194
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = +2
Query: 245 LTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGADISMTGEA 424
+ H LR + VS V SD E + D N +K + D+ + EA
Sbjct: 119 IPHMLRMYLRARGQVSGPVNAPVQVIPSDSEDSDDEEEDSNPWKRVK--NEPDVDVKNEA 176
Query: 425 CACGPTPARLLPEPEP 472
P PA P PEP
Sbjct: 177 STSNPEPAMQEPVPEP 192
>At1g13120.1 68414.m01521 expressed protein contains Prosite
PS00012: Phosphopantetheine attachment site; similar to
GLE1 (GI:3288817) {Homo sapiens}; EST gb|N37870 comes
from this gene
Length = 611
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 284 NVSEKVEEHDSGTESDDEADRADSGDLNT 370
+VSE E D G ESDDE + D + T
Sbjct: 67 HVSEDEMESDEGEESDDEEEEEDHSQICT 95
>At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07881
AT.I.24-9 gene product from [Arabidopsis thaliana] (Mol.
Gen. Genet. 219 (1-2), 106-112 (1989))
Length = 1081
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 119 NNEPSDLIQ*YSISVPCKRD-RGPRE*MSVDDPESRGSIMLKFLTHKLRT 265
+N+ DL+ SI + D RG ++ ++ DD I +KFLT+KLRT
Sbjct: 481 SNKGRDLMALKSIDNASENDGRGEKDGLADDDANLM--IKMKFLTYKLRT 528
>At5g52830.1 68418.m06558 WRKY family transcription factor
Length = 348
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 269 SLNEENVSEKVEEHDSGTESDDEAD 343
++ EE E+VEE D E DD+ D
Sbjct: 290 NMEEEEEEEEVEEDDEEEEDDDDVD 314
>At5g17160.1 68418.m02010 expressed protein
Length = 569
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 269 SLNEENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDG--ADISMTGEACACGPT 442
S++++ ++E+D+ E+ +D+GD T ++ ND I+ E T
Sbjct: 333 SVDQQETEHAIQENDAEPETKVNQTDSDAGDSKTKQAIQENDSEPEKINNFDEETMVDQT 392
Query: 443 PARLLPEPEPDH 478
+ EPE +H
Sbjct: 393 DSDSETEPEENH 404
>At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 315
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 230 IMLKFLTHKLRTHSLNEENVSEKVEEHDSGTESDDEADRADSGDLNTD 373
I+++ + + HS N+E+ SE + E + D++ D D GD N D
Sbjct: 56 ILMEMMNNNHDQHSTNQED-SESILE-----DEDEDEDDGDDGDQNND 97
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 281 ENVSEKVEEH-DSGTESDDEADRADSGDLNTDV 376
E +SEK+ H DS + S D D +S L T +
Sbjct: 13 EKISEKIHGHDDSSSSSSDSDDDKNSASLKTKI 45
>At1g11770.1 68414.m01351 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 406
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 520 DHLEFLFRRVVVVEMIGLWFRQKSG-RSRPACTRLP 416
D L+FLF++++ V IGL F G S A T+ P
Sbjct: 256 DGLDFLFKKMIEVGKIGLVFNPYGGIMSTVATTKTP 291
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 75 PSVTHPHTS*RAAVRPPRSNAGLL 4
PSV+ PH S +++ RP R AGLL
Sbjct: 406 PSVSLPHLSIQSSPRPKRPWAGLL 429
>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
identical to RelA/SpoT homolog RSH2 [Arabidopsis
thaliana] GI:7141306; contains Pfam profiles PF01966: HD
domain, PF04607: Region found in RelA / SpoT proteins
Length = 709
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 65 VTEGLKWS-WNVSHRCESVNNEPSDLIQ*YSISVPCK 172
V + ++W+ W V+ CE+++ + S + SI PCK
Sbjct: 544 VLQMVEWARWVVTWHCEAMSKDRSSISSSDSIKPPCK 580
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 278 EENVSEKVEEHDSGTESDDEADRADSGDLNTDVIMKWNDGADIS 409
EE ++ EE + +D E+D+ + G+L+ D + +G D++
Sbjct: 1882 EEESRDQTEEENQEPLTDMESDK-EEGELDLDTLEDLEEGTDVA 1924
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,878
Number of Sequences: 28952
Number of extensions: 229573
Number of successful extensions: 968
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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