Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a01r
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    30   0.25 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.4  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    27   1.8  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    27   1.8  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   2.4  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.5  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 404 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGKRY 258
           +EA+ E +    + DLP  +VA PE++  V  +NP+ ++   E    R+
Sbjct: 219 MEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSRF 267


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 106 RIHKLLVKKYKRINYLYKKCYLLXTEKL 189
           R+  L+++K + IN+  ++C  L TEK+
Sbjct: 284 RLESLILEKQEEINFWKQRCRALETEKI 311


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 455 LLKXDEDGXGRVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQS 279
           LL+ D+D  G  + +     +P DL+K   V+L +E   +  D   VQ  + +V N +S
Sbjct: 258 LLEQDQDLAGMYLTERLKTGKPRDLDKHDEVELLLETYCKQVD-EIVQQTDNLVGNIRS 315


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 302 PIVENSQSEYPGKRYPDATWR 240
           PI+E+S ++YP    P A WR
Sbjct: 89  PIIESSMNKYPLNGRPQAFWR 109


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 368 LVDLPVENVAEPEDLSP--VQVVNPIVENSQSEYPGKR 261
           L+DL   +VAEP D  P   QV +  V++S S +P  +
Sbjct: 429 LMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPSSQ 466


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 401 EAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSE---YPGKRYPDA 249
           EA  E+    +  D  VE  ++P DL+    +  +  NSQ E     GK Y D+
Sbjct: 11  EAPLEENSPPRFFDSDVEADSKPNDLTAANSIVDLKTNSQHENANAAGKEYGDS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,081
Number of Sequences: 5004
Number of extensions: 32027
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)