Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a01r
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565...    30   1.4  
04_03_0691 - 18756812-18756883,18757453-18757590,18758017-187583...    28   5.5  
12_01_0877 - 8415186-8415272,8415696-8416310                           27   9.7  
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266...    27   9.7  

>08_02_0396 -
           16654603-16655030,16655803-16655906,16655988-16656579,
           16656820-16656993,16657105-16657309
          Length = 500

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 362 DLPVENVAEPEDLSPVQVVNPIVENSQSE 276
           D PVE++AE     PVQ +  ++EN+Q +
Sbjct: 94  DAPVESIAEEVLEEPVQCLETVIENTQEQ 122


>04_03_0691 -
           18756812-18756883,18757453-18757590,18758017-18758308,
           18758485-18758648,18759159-18759434,18759512-18759718,
           18760303-18760475,18761978-18762139,18762561-18762720
          Length = 547

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -3

Query: 479 LDQLG*ISLLKXDEDGXGRVIVDLPIEAQPED----LEKAQLVDLPVENVAEPEDLSPVQ 312
           LD L  ++L     D     ++++P  A   D    L K +++  P+ NV  PED S + 
Sbjct: 88  LDGLKRVALFYAISDNAIGDLIEIPSNASLADTVEILSKNKILSAPIRNVDAPEDASWID 147

Query: 311 VVNPIVE 291
               IVE
Sbjct: 148 KYIGIVE 154


>12_01_0877 - 8415186-8415272,8415696-8416310
          Length = 233

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 404 IEAQPEDLEKAQLVDLPVENVAEPED-LSPVQVVNPIVENSQSEYPGKRYPDAT 246
           IEA     E+ +    P E   EPE  L P +   P+V N  S  P    P+AT
Sbjct: 151 IEATLPKKEEPKPPSPPREAEPEPEPPLPPPEEPTPLVRNEPSPAPTPEKPEAT 204


>01_06_0645 +
           30826267-30826307,30826403-30826454,30826580-30826659,
           30826804-30826882,30826962-30827045,30827131-30827276,
           30827362-30827628,30827825-30827907,30828162-30828271,
           30828544-30829159,30829471-30829620,30829700-30829800
          Length = 602

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 368 LVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPG 267
           L+DL + +  +  DLS V +V P+   S+ + PG
Sbjct: 512 LIDLNITSSQKKVDLSDVGIVGPLSGGSEDKGPG 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,107,179
Number of Sequences: 37544
Number of extensions: 174842
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)