Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a01r
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24619| Best HMM Match : Sex_peptide (HMM E-Value=7)                 28   4.3  
SB_2822| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_24619| Best HMM Match : Sex_peptide (HMM E-Value=7)
          Length = 111

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 463 EYRC*XWTKMEXDVLLLIYLLRHNPKI*RKPS 368
           +YRC   +     + L+ YLL HNPKI   P+
Sbjct: 70  DYRCLTKSCQTRALRLMFYLLTHNPKILYAPN 101


>SB_2822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 170 YXIQKNYECKCSNSDKNLK 226
           Y  ++N +C+C N DKN+K
Sbjct: 22  YPARENKKCRCPNKDKNMK 40


>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 87  RFRNSLKDTQTF-SKKV*KN*LLI*EMLFIXYRKIMNVNV 203
           RFRNS+KDT+ F S  V  +  L+   + I  RK+ N  V
Sbjct: 111 RFRNSVKDTRVFRSSDVGSDHYLVCATVKIRLRKVQNGRV 150


>SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 396 CLXXXXXXXTSXSIFVXFQQRYSTQLIEPTSLSFSDFLIRLFNWV 530
           CL       +   + V ++ RYSTQL E    S  ++L  L   V
Sbjct: 516 CLNTSPIKDSLHGLSVAWKMRYSTQLHEEAKASLPEYLAELIETV 560


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,281,469
Number of Sequences: 59808
Number of extensions: 215029
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)