Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a01r
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 410 LPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGKRYP 255
           +P++         Q+  +   N+ EPE    V+  +P+++N  + Y    YP
Sbjct: 494 VPVDVVLSSFTLQQIPVVEASNIPEPEHAMNVRNSSPLLDNQSAPYNSFFYP 545


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 413  DLP-IEAQPEDL--EKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGK-RYPDAT 246
            D P + A+P D   +KA     P +  A+P DLSP + + PI  N+Q   P   + P   
Sbjct: 927  DAPKVAAKPRDPSPKKAVPEKEPAKVAAKPRDLSPKKAI-PIPANTQEAPPTPVKNPVKK 985

Query: 245  WR 240
            W+
Sbjct: 986  WK 987


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,711
Number of Sequences: 27780
Number of extensions: 173740
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)