Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11a01r
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.0  
At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein s...    29   2.7  
At2g36420.1 68415.m04471 expressed protein                             27   6.1  

>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 419 IVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQS 279
           I D  ++    +L   ++ DLPV    EPE+L   +VVN +VE ++S
Sbjct: 162 IQDSRLDEPVTELPPLKVKDLPVMETNEPEEL--YRVVNDMVEGAKS 206


>At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein
           similar to gibberellin 20-oxidase GI:4164141 from
           [Lactuca sativa]; contains Pfam domain PF03171
           2OG-Fe(II) oxygenase superfamily
          Length = 385

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 314 QVVNPIVENSQSEYPGKRYPDATWR*XIYFS-SFYLN*NIYIHNFS 180
           +++ P  E  + E   ++YPD TW     F+ S Y   N  +HNFS
Sbjct: 328 KIIVPPPELVEGEEASRKYPDFTWAQLQKFTQSGYRVDNTTLHNFS 373


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 395 QPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGKRYPD 252
           + E LEK +  +   +   + E  SPV V++P+ E  + E   +  PD
Sbjct: 227 ETESLEKVRGQEEEDKEEEDKEQCSPVSVLDPLEEEEEDEDHHQHEPD 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,426,212
Number of Sequences: 28952
Number of extensions: 156544
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)