Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11a01f
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0152 - 26008495-26009074,26010555-26011361,26016536-260166... 36 0.032
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419 30 1.2
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 1.2
05_03_0288 - 11653136-11654074,11655252-11655965 30 1.6
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 29 2.1
10_01_0194 + 2130274-2131725 29 2.1
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469 29 3.7
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 28 4.9
05_07_0140 - 27982037-27983794 28 4.9
09_04_0541 + 18437075-18440062 28 6.5
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 28 6.5
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 27 8.6
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460... 27 8.6
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 27 8.6
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 27 8.6
>05_06_0152 -
26008495-26009074,26010555-26011361,26016536-26016657,
26016860-26017462
Length = 703
Score = 35.5 bits (78), Expect = 0.032
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = -1
Query: 554 FVFQLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRP 375
F+F + + +CS+G LVN LE R ++ H P L C+R L + RR
Sbjct: 237 FLFIIRNAQCSKGFLVNTFESLEPRVVNALRDSRCHHGGPALPPFYCIRPLVEKADERRD 296
Query: 374 QLEHRGFLRSLQSQP 330
+ E L L QP
Sbjct: 297 RAERHECLAWLDRQP 311
>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
Length = 464
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -3
Query: 267 KSTLSTGISMSK-IATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSYFGIGISAIWTGL 91
++ TGIS+ +A SL + PA AS + ++ + ++PAS +S +G + +G
Sbjct: 69 RALAGTGISLVVGVANGDIPSLAADPAAASRWLAANVLPFVPASTISVVAVGNEVLESGD 128
Query: 90 IDAAAA 73
AAA
Sbjct: 129 ASLAAA 134
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 164 DEVIQELALAGIELSENVDNVAIFDIE-IPVDNVDFPVDSVNFVENVEAPVENADFPADS 340
D I ELA +++ N D AI +I+ I +D +F D + + + +N A
Sbjct: 1364 DAKITELAQTNLDIKNNADQRAIQNIQCINMDEAEFVTDDLK-SDCLAMHADNVQRDASL 1422
Query: 341 VSFVENLDAPVEDAD 385
+E A +E AD
Sbjct: 1423 TKNIEESSASLEGAD 1437
>05_03_0288 - 11653136-11654074,11655252-11655965
Length = 550
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 98 VQIADIPIPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIP 250
V ++ +P+ E + G ++P ++ +A+ G+E+ N V +F P
Sbjct: 109 VMVSFFGLPEKEVVRIGKAVLPKFFLEGMAMEGLEVVRNAKKVVVFSPLFP 159
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 119 IPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVE 295
+P Y ++D I PD +EL ++ +E E D+ + DI + D D + FV+
Sbjct: 173 LPTYVALDLAKSIEPDADKEELRMSVVEPIEKADDPSSHDIPVGSTKGDEYDDRICFVK 231
>10_01_0194 + 2130274-2131725
Length = 483
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 319 ILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVVYIFAQ 203
+L W+ D+ + + +NR I V NF++ ++V +F Q
Sbjct: 351 VLRWNLDVNFWISILNRCITVAEKNFSLYGKHVRSLFEQ 389
>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
Length = 198
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 58 RTHWSGGRRINQTRPNRGYPNTEIRKHRRWNVHHPRRSHSRTRLG 192
R W G + +TR R +P RRW H PRR T +G
Sbjct: 10 RWRWGGASSLARTRRRRLFP-----AWRRWIRHCPRRIRPETAVG 49
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 76 GRRINQTRPNRGYPNTEIR-KHRRWNVHHPRRSHSRTRLGRD*IERKCRQRCDF*H 240
G R + +RGY E R K+R N + R+ +R GRD E + R R D H
Sbjct: 461 GERSSSRYDDRGYSKHESRGKYRDGNDDYRRQPGGGSRYGRDKYEGERRYREDDGH 516
>05_07_0140 - 27982037-27983794
Length = 585
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -1
Query: 536 HPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRP 375
HPR N+RPQL R R + + R + E R R QN H P
Sbjct: 101 HPRFGPKWRFNQRPQLPQR---RDEEVEARRREAEKERARRERHFQNNRSHHHP 151
>09_04_0541 + 18437075-18440062
Length = 995
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 78 PPHQSNPSKSRISQYRNTKASTLECTSSPT 167
PP Q P R Q+R TKAS + ++ T
Sbjct: 82 PPQQPQPQTPRQRQHRETKASDVAAAAAST 111
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/92 (23%), Positives = 38/92 (41%)
Frame = -1
Query: 545 QLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLE 366
Q+ + Q + ++ QL+ ++ Q QP + QL R QN+P Q++
Sbjct: 975 QVQQQQQQQQQQQQQQQQLQLQQHALPVQQQPDQKYSQLPSSGDTRHEQNKPQKLESQMD 1034
Query: 365 HRGFLRSLQSQPGNRHSQLELRHFLRSLQNQQ 270
H+ L Q + Q+ L + Q QQ
Sbjct: 1035 HQSELVQQQQVYFQQQQQMYLMQQQQMYQQQQ 1066
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 328 EIGILNWSFDIFYEVYRINREIDVV--NGNFNVKNRNVVYIFAQFNPGQGEFLND 170
EI ++ F + ++ ++ ++V+ + + NV + V+ I +F+P EF++D
Sbjct: 188 EIRDMSIEFQFWESMHSVSSSVEVIWQSNHSNVPVQQVIEIPPEFDPDSSEFVSD 242
>09_06_0201 -
21545189-21545494,21545593-21545743,21545835-21546072,
21546158-21546365,21546446-21546639,21546721-21546819,
21546886-21546922,21548242-21548775
Length = 588
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 263 DFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPVEDAD 385
D PV +V +V N E PV N ++S ++ D V DAD
Sbjct: 72 DIPVRTVVWVANQETPVTN----GTALSLTDSSDLVVSDAD 108
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Frame = -1
Query: 455 QPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRS-------LQSQPGNRHSQLELRH 297
QP ++ QL+ ++ QNQ H++ QL+ + L+ LQ Q +H QL+ +
Sbjct: 651 QPPMQQQQLQQQQNQLQQQNQL-HQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQG 709
Query: 296 FLRSLQNQQGNRRCQREFQCQKSQR 222
Q QG+ Q++ Q + Q+
Sbjct: 710 LPLQQQQSQGHPLQQQQMQQMQQQQ 734
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 158 IPDEVIQELALAGIELSENVDNVAIFD 238
+PD ++ L + G+E +E++D+V + D
Sbjct: 106 LPDNKVRVLWIDGVEKTEDIDSVVVMD 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,447
Number of Sequences: 37544
Number of extensions: 307041
Number of successful extensions: 984
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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