Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p23r
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.00 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 322 VLLKSVPKRKMKALGSLSMMSFLDLSAQNI 411
           V+  SVP  +   LG L  +  LDLS  NI
Sbjct: 206 VVAPSVPFEQDTGLGGLQNIKVLDLSFNNI 235


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -2

Query: 434 MTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSN 324
           ++L++ A+ F  D +++ ++  +   F+FL    F N
Sbjct: 425 ISLVIGAIYFGQDLNQDGVMNINGVLFVFLTNMTFQN 461


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -2

Query: 434 MTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSN 324
           ++L++ A+ F  D +++ ++  +   F+FL    F N
Sbjct: 425 ISLVIGAIYFGQDLNQDGVMNINGVLFVFLTNMTFQN 461


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 486 SPSESRDINGSPTPGVVNDPHLSR 415
           +P+   D  G+P P ++ D H +R
Sbjct: 312 TPNVVLDEEGNPCPDIIIDVHGTR 335


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 486 SPSESRDINGSPTPGVVNDPHLSR 415
           SP+   +   SPTPG V  P   R
Sbjct: 44  SPAPPEEEAASPTPGDVPTPSSPR 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,446
Number of Sequences: 336
Number of extensions: 4055
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)