Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p23r
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    30   2.0  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           29   2.6  
10_08_0328 - 16805296-16806121,16806493-16807274                       29   3.4  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     29   4.5  
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    29   4.5  
03_05_0745 - 27346266-27346355,27346990-27347082,27347315-273474...    28   7.9  

>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
            43196512-43196589,43196664-43197727,43197813-43198503,
            43198743-43199541,43200010-43200158,43200159-43200286,
            43200389-43200494,43200835-43200843,43201332-43201821,
            43201896-43202554,43203759-43203851,43204044-43204196,
            43205092-43205194,43205376-43205467,43206229-43206306,
            43206987-43207049,43207339-43207512
          Length = 1902

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -2

Query: 320  ASRLMIAGMASQRCELVNWMFWPLLTGVVTSLYKPEYELSILYALVVFSVLAHVHYGICV 141
            AS ++ A   ++RC L +   W L  G V+ LY      SIL++    S L    Y + +
Sbjct: 1496 ASFVIYASPQTRRCALESMELWGLAKGSVSGLY------SILFSSQPISHLQFAAYSLLL 1549

Query: 140  VKQICGYYKI-DCFL 99
             + +C +  I +C L
Sbjct: 1550 SEPLCQFSLIKECSL 1564


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 464 MSRLSLGDSFWLSKHCIQQQEPFPISRRDELTLRKTKRT 580
           + RL   D +W +K C+Q  E  P SR + L L  T R+
Sbjct: 290 LKRLQFIDLYWNNKLCVQLPEFLPGSRLEVLDLILTNRS 328


>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 358 ALGSLSMMSFLDLSAQNIRAAKMRVIDHTGRRASVNVS 471
           ALGSL+ + +LDLSA N+       + H      +N+S
Sbjct: 295 ALGSLTSLKYLDLSANNLTGGIPYELGHLSNLQFLNLS 332


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +1

Query: 358 ALGSLSMMSFLDLSAQNIRAAKMRVIDHTGRRASVNVS 471
           ALG+L+M+S LDL++ N+       I H G+ + +++S
Sbjct: 340 ALGNLTMLSVLDLASCNLTGPIPLDIRHLGQLSELHLS 377


>10_08_0585 - 18998013-18998306,18998448-18998630,18999048-18999089,
            18999226-18999495,18999903-19000454,19000546-19000770,
            19001435-19001640,19001738-19001936,19002166-19002381,
            19002887-19002991,19003127-19003243,19003366-19003548,
            19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 348  SLRDTLQ*YCKSSNDCGNGESTLRACQLDVLAFAYRSCDVIVQTRVRTVDPVRTCRI-*R 172
            +L D LQ    ++ND G     L +C L  +   Y+ CD +V   ++TV+ + + ++  R
Sbjct: 891  ALVDYLQDSDINTNDEGKNREYLLSCDLLWVLEHYQKCDRVVTPTLKTVETLLSKKVFLR 950

Query: 171  VGTC 160
             G C
Sbjct: 951  EGHC 954


>03_05_0745 -
           27346266-27346355,27346990-27347082,27347315-27347404,
           27347753-27347804,27347894-27348000,27348209-27348313,
           27348383-27348512,27348861-27348991,27349348-27349449,
           27349557-27349655,27349771-27350040
          Length = 422

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -2

Query: 563 EVLIHLVGLLGTAPVAVYNVYLARKNRRAKVETLTEALRPVWSMTLILAALIFWADKSKN 384
           EV ++ +GLL    +    V LA+    A ++ LT     +W +  +L  L+ WA  S  
Sbjct: 244 EVYLNALGLLLRLHIRG-QVDLAKDRLAALLDALTN--EKIWHVEWLLDLLVLWALSSMG 300

Query: 383 DIIESD 366
           +I  +D
Sbjct: 301 EITRAD 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,139
Number of Sequences: 37544
Number of extensions: 389413
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)